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KRTAP23-1 (keratin associated protein 23-1)

Identity

Alias_symbol (synonym)KAP23.1
Other alias
HGNC (Hugo) KRTAP23-1
LocusID (NCBI) 337963
Atlas_Id 65098
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30348399 and ends at 30348606 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP23-1   18928
Cards
Entrez_Gene (NCBI)KRTAP23-1  337963  keratin associated protein 23-1
AliasesKAP23.1
GeneCards (Weizmann)KRTAP23-1
Ensembl hg19 (Hinxton)ENSG00000186980 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186980 [Gene_View]  chr21:30348399-30348606 [Contig_View]  KRTAP23-1 [Vega]
ICGC DataPortalENSG00000186980
TCGA cBioPortalKRTAP23-1
AceView (NCBI)KRTAP23-1
Genatlas (Paris)KRTAP23-1
WikiGenes337963
SOURCE (Princeton)KRTAP23-1
Genetics Home Reference (NIH)KRTAP23-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP23-1  -     chr21:30348399-30348606 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP23-1  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP23-1 - 21q22.11 [CytoView hg19]  KRTAP23-1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP23-1 [Mapview hg19]  KRTAP23-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC128435
RefSeq transcript (Entrez)NM_181624
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP23-1
Cluster EST : UnigeneHs.553688 [ NCBI ]
CGAP (NCI)Hs.553688
Alternative Splicing GalleryENSG00000186980
Gene ExpressionKRTAP23-1 [ NCBI-GEO ]   KRTAP23-1 [ EBI - ARRAY_EXPRESS ]   KRTAP23-1 [ SEEK ]   KRTAP23-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP23-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337963
GTEX Portal (Tissue expression)KRTAP23-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1A580   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1A580  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1A580
Splice isoforms : SwissVarA1A580
PhosPhoSitePlusA1A580
Domains : Interpro (EBI)KRTAP_PMG   
Domain families : Pfam (Sanger)PMG (PF05287)   
Domain families : Pfam (NCBI)pfam05287   
Conserved Domain (NCBI)KRTAP23-1
DMDM Disease mutations337963
Blocks (Seattle)KRTAP23-1
SuperfamilyA1A580
Human Protein AtlasENSG00000186980
Peptide AtlasA1A580
HPRD11217
IPIIPI00373962   
Protein Interaction databases
DIP (DOE-UCLA)A1A580
IntAct (EBI)A1A580
FunCoupENSG00000186980
BioGRIDKRTAP23-1
STRING (EMBL)KRTAP23-1
ZODIACKRTAP23-1
Ontologies - Pathways
QuickGOA1A580
Ontology : AmiGOprotein binding  cytosol  intermediate filament  keratinization  
Ontology : EGO-EBIprotein binding  cytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP23-1
Atlas of Cancer Signalling NetworkKRTAP23-1
Wikipedia pathwaysKRTAP23-1
Orthology - Evolution
OrthoDB337963
GeneTree (enSembl)ENSG00000186980
Phylogenetic Trees/Animal Genes : TreeFamKRTAP23-1
HOVERGENA1A580
HOGENOMA1A580
Homologs : HomoloGeneKRTAP23-1
Homology/Alignments : Family Browser (UCSC)KRTAP23-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP23-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP23-1
dbVarKRTAP23-1
ClinVarKRTAP23-1
1000_GenomesKRTAP23-1 
Exome Variant ServerKRTAP23-1
ExAC (Exome Aggregation Consortium)KRTAP23-1 (select the gene name)
Genetic variants : HAPMAP337963
Genomic Variants (DGV)KRTAP23-1 [DGVbeta]
DECIPHERKRTAP23-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP23-1 
Mutations
ICGC Data PortalKRTAP23-1 
TCGA Data PortalKRTAP23-1 
Broad Tumor PortalKRTAP23-1
OASIS PortalKRTAP23-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP23-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP23-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP23-1
DgiDB (Drug Gene Interaction Database)KRTAP23-1
DoCM (Curated mutations)KRTAP23-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP23-1 (select a term)
intoGenKRTAP23-1
Cancer3DKRTAP23-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP23-1
Genetic Testing Registry KRTAP23-1
NextProtA1A580 [Medical]
TSGene337963
GENETestsKRTAP23-1
Target ValidationKRTAP23-1
Huge Navigator KRTAP23-1 [HugePedia]
snp3D : Map Gene to Disease337963
BioCentury BCIQKRTAP23-1
ClinGenKRTAP23-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337963
Chemical/Pharm GKB GenePA134978709
Clinical trialKRTAP23-1
Miscellaneous
canSAR (ICR)KRTAP23-1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP23-1
EVEXKRTAP23-1
GoPubMedKRTAP23-1
iHOPKRTAP23-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:16 CEST 2017

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