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KRTAP24-1 (keratin associated protein 24-1)

Identity

Alias_symbol (synonym)KAP24.1
Other alias
HGNC (Hugo) KRTAP24-1
LocusID (NCBI) 643803
Atlas_Id 65100
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30281309 and ends at 30282958 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP24-1   33902
Cards
Entrez_Gene (NCBI)KRTAP24-1  643803  keratin associated protein 24-1
AliasesKAP24.1
GeneCards (Weizmann)KRTAP24-1
Ensembl hg19 (Hinxton)ENSG00000188694 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188694 [Gene_View]  chr21:30281309-30282958 [Contig_View]  KRTAP24-1 [Vega]
ICGC DataPortalENSG00000188694
TCGA cBioPortalKRTAP24-1
AceView (NCBI)KRTAP24-1
Genatlas (Paris)KRTAP24-1
WikiGenes643803
SOURCE (Princeton)KRTAP24-1
Genetics Home Reference (NIH)KRTAP24-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP24-1  -     chr21:30281309-30282958 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP24-1  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP24-1 - 21q22.11 [CytoView hg19]  KRTAP24-1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP24-1 [Mapview hg19]  KRTAP24-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096935 AM238513
RefSeq transcript (Entrez)NM_001085455
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP24-1
Cluster EST : UnigeneHs.580883 [ NCBI ]
CGAP (NCI)Hs.580883
Alternative Splicing GalleryENSG00000188694
Gene ExpressionKRTAP24-1 [ NCBI-GEO ]   KRTAP24-1 [ EBI - ARRAY_EXPRESS ]   KRTAP24-1 [ SEEK ]   KRTAP24-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP24-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643803
GTEX Portal (Tissue expression)KRTAP24-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI83
Splice isoforms : SwissVarQ3LI83
PhosPhoSitePlusQ3LI83
Domains : Interpro (EBI)Keratin_matx    KRTAP_PMG   
Domain families : Pfam (Sanger)PMG (PF05287)   
Domain families : Pfam (NCBI)pfam05287   
Conserved Domain (NCBI)KRTAP24-1
DMDM Disease mutations643803
Blocks (Seattle)KRTAP24-1
SuperfamilyQ3LI83
Human Protein AtlasENSG00000188694
Peptide AtlasQ3LI83
IPIIPI00414750   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI83
IntAct (EBI)Q3LI83
FunCoupENSG00000188694
BioGRIDKRTAP24-1
STRING (EMBL)KRTAP24-1
ZODIACKRTAP24-1
Ontologies - Pathways
QuickGOQ3LI83
Ontology : AmiGOstructural molecule activity  cytosol  keratinization  keratin filament  
Ontology : EGO-EBIstructural molecule activity  cytosol  keratinization  keratin filament  
NDEx NetworkKRTAP24-1
Atlas of Cancer Signalling NetworkKRTAP24-1
Wikipedia pathwaysKRTAP24-1
Orthology - Evolution
OrthoDB643803
GeneTree (enSembl)ENSG00000188694
Phylogenetic Trees/Animal Genes : TreeFamKRTAP24-1
HOVERGENQ3LI83
HOGENOMQ3LI83
Homologs : HomoloGeneKRTAP24-1
Homology/Alignments : Family Browser (UCSC)KRTAP24-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP24-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP24-1
dbVarKRTAP24-1
ClinVarKRTAP24-1
1000_GenomesKRTAP24-1 
Exome Variant ServerKRTAP24-1
ExAC (Exome Aggregation Consortium)KRTAP24-1 (select the gene name)
Genetic variants : HAPMAP643803
Genomic Variants (DGV)KRTAP24-1 [DGVbeta]
DECIPHERKRTAP24-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP24-1 
Mutations
ICGC Data PortalKRTAP24-1 
TCGA Data PortalKRTAP24-1 
Broad Tumor PortalKRTAP24-1
OASIS PortalKRTAP24-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP24-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP24-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP24-1
DgiDB (Drug Gene Interaction Database)KRTAP24-1
DoCM (Curated mutations)KRTAP24-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP24-1 (select a term)
intoGenKRTAP24-1
Cancer3DKRTAP24-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP24-1
Genetic Testing Registry KRTAP24-1
NextProtQ3LI83 [Medical]
TSGene643803
GENETestsKRTAP24-1
Target ValidationKRTAP24-1
Huge Navigator KRTAP24-1 [HugePedia]
snp3D : Map Gene to Disease643803
BioCentury BCIQKRTAP24-1
ClinGenKRTAP24-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643803
Chemical/Pharm GKB GenePA162393751
Clinical trialKRTAP24-1
Miscellaneous
canSAR (ICR)KRTAP24-1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP24-1
EVEXKRTAP24-1
GoPubMedKRTAP24-1
iHOPKRTAP24-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:16 CEST 2017

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