Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP25-1 (keratin associated protein 25-1)

Identity

Alias_symbol (synonym)KAP25.1
Other alias
HGNC (Hugo) KRTAP25-1
LocusID (NCBI) 100131902
Atlas_Id 65101
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30289145 and ends at 30289514 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP25-1   34003
Cards
Entrez_Gene (NCBI)KRTAP25-1  100131902  keratin associated protein 25-1
AliasesKAP25.1
GeneCards (Weizmann)KRTAP25-1
Ensembl hg19 (Hinxton)ENSG00000232263 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232263 [Gene_View]  chr21:30289145-30289514 [Contig_View]  KRTAP25-1 [Vega]
ICGC DataPortalENSG00000232263
TCGA cBioPortalKRTAP25-1
AceView (NCBI)KRTAP25-1
Genatlas (Paris)KRTAP25-1
WikiGenes100131902
SOURCE (Princeton)KRTAP25-1
Genetics Home Reference (NIH)KRTAP25-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP25-1  -     chr21:30289145-30289514 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP25-1  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP25-1 - 21q22.11 [CytoView hg19]  KRTAP25-1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP25-1 [Mapview hg19]  KRTAP25-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB180043
RefSeq transcript (Entrez)NM_001128598
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP25-1
Cluster EST : UnigeneHs.580882 [ NCBI ]
CGAP (NCI)Hs.580882
Alternative Splicing GalleryENSG00000232263
Gene ExpressionKRTAP25-1 [ NCBI-GEO ]   KRTAP25-1 [ EBI - ARRAY_EXPRESS ]   KRTAP25-1 [ SEEK ]   KRTAP25-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP25-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100131902
GTEX Portal (Tissue expression)KRTAP25-1
Human Protein AtlasENSG00000232263-KRTAP25-1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LHN0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LHN0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LHN0
Splice isoforms : SwissVarQ3LHN0
PhosPhoSitePlusQ3LHN0
Domains : Interpro (EBI)KRTAP_PMG   
Domain families : Pfam (Sanger)PMG (PF05287)   
Domain families : Pfam (NCBI)pfam05287   
Conserved Domain (NCBI)KRTAP25-1
DMDM Disease mutations100131902
Blocks (Seattle)KRTAP25-1
SuperfamilyQ3LHN0
Human Protein Atlas [tissue]ENSG00000232263-KRTAP25-1 [tissue]
Peptide AtlasQ3LHN0
IPIIPI00654806   
Protein Interaction databases
DIP (DOE-UCLA)Q3LHN0
IntAct (EBI)Q3LHN0
FunCoupENSG00000232263
BioGRIDKRTAP25-1
STRING (EMBL)KRTAP25-1
ZODIACKRTAP25-1
Ontologies - Pathways
QuickGOQ3LHN0
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP25-1
Atlas of Cancer Signalling NetworkKRTAP25-1
Wikipedia pathwaysKRTAP25-1
Orthology - Evolution
OrthoDB100131902
GeneTree (enSembl)ENSG00000232263
Phylogenetic Trees/Animal Genes : TreeFamKRTAP25-1
HOVERGENQ3LHN0
HOGENOMQ3LHN0
Homologs : HomoloGeneKRTAP25-1
Homology/Alignments : Family Browser (UCSC)KRTAP25-1
Gene fusions - Rearrangements
Fusion: Tumor Portal KRTAP25-1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP25-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP25-1
dbVarKRTAP25-1
ClinVarKRTAP25-1
1000_GenomesKRTAP25-1 
Exome Variant ServerKRTAP25-1
ExAC (Exome Aggregation Consortium)ENSG00000232263
GNOMAD BrowserENSG00000232263
Genetic variants : HAPMAP100131902
Genomic Variants (DGV)KRTAP25-1 [DGVbeta]
DECIPHERKRTAP25-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP25-1 
Mutations
ICGC Data PortalKRTAP25-1 
TCGA Data PortalKRTAP25-1 
Broad Tumor PortalKRTAP25-1
OASIS PortalKRTAP25-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP25-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP25-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP25-1
DgiDB (Drug Gene Interaction Database)KRTAP25-1
DoCM (Curated mutations)KRTAP25-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP25-1 (select a term)
intoGenKRTAP25-1
Cancer3DKRTAP25-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP25-1
Genetic Testing Registry KRTAP25-1
NextProtQ3LHN0 [Medical]
TSGene100131902
GENETestsKRTAP25-1
Target ValidationKRTAP25-1
Huge Navigator KRTAP25-1 [HugePedia]
snp3D : Map Gene to Disease100131902
BioCentury BCIQKRTAP25-1
ClinGenKRTAP25-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100131902
Chemical/Pharm GKB GenePA162393758
Clinical trialKRTAP25-1
Miscellaneous
canSAR (ICR)KRTAP25-1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP25-1
EVEXKRTAP25-1
GoPubMedKRTAP25-1
iHOPKRTAP25-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:53:08 CET 2017

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