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KRTAP26-1 (keratin associated protein 26-1)

Identity

Other alias-
HGNC (Hugo) KRTAP26-1
LocusID (NCBI) 388818
Atlas_Id 65102
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 31691450 and ends at 31692607 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP26-1   33760
Cards
Entrez_Gene (NCBI)KRTAP26-1  388818  keratin associated protein 26-1
Aliases
GeneCards (Weizmann)KRTAP26-1
Ensembl hg19 (Hinxton)ENSG00000197683 [Gene_View]  chr21:31691450-31692607 [Contig_View]  KRTAP26-1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197683 [Gene_View]  chr21:31691450-31692607 [Contig_View]  KRTAP26-1 [Vega]
ICGC DataPortalENSG00000197683
TCGA cBioPortalKRTAP26-1
AceView (NCBI)KRTAP26-1
Genatlas (Paris)KRTAP26-1
WikiGenes388818
SOURCE (Princeton)KRTAP26-1
Genetics Home Reference (NIH)KRTAP26-1
Genomic and cartography
GoldenPath hg19 (UCSC)KRTAP26-1  -     chr21:31691450-31692607 -  21q22.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRTAP26-1  -     21q22.11   [Description]    (hg38-Dec_2013)
EnsemblKRTAP26-1 - 21q22.11 [CytoView hg19]  KRTAP26-1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP26-1 [Mapview hg19]  KRTAP26-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096936 AM941740 BC057825 CB996254 HQ448018
RefSeq transcript (Entrez)NM_203405
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)KRTAP26-1
Cluster EST : UnigeneHs.28704 [ NCBI ]
CGAP (NCI)Hs.28704
Alternative Splicing GalleryENSG00000197683
Gene ExpressionKRTAP26-1 [ NCBI-GEO ]   KRTAP26-1 [ EBI - ARRAY_EXPRESS ]   KRTAP26-1 [ SEEK ]   KRTAP26-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP26-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388818
GTEX Portal (Tissue expression)KRTAP26-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PEX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PEX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PEX3
Splice isoforms : SwissVarQ6PEX3
PhosPhoSitePlusQ6PEX3
Domains : Interpro (EBI)KRTAP_PMG   
Domain families : Pfam (Sanger)PMG (PF05287)   
Domain families : Pfam (NCBI)pfam05287   
Conserved Domain (NCBI)KRTAP26-1
DMDM Disease mutations388818
Blocks (Seattle)KRTAP26-1
SuperfamilyQ6PEX3
Human Protein AtlasENSG00000197683
Peptide AtlasQ6PEX3
HPRD14206
IPIIPI00397845   
Protein Interaction databases
DIP (DOE-UCLA)Q6PEX3
IntAct (EBI)Q6PEX3
FunCoupENSG00000197683
BioGRIDKRTAP26-1
STRING (EMBL)KRTAP26-1
ZODIACKRTAP26-1
Ontologies - Pathways
QuickGOQ6PEX3
Ontology : AmiGOprotein binding  intermediate filament  
Ontology : EGO-EBIprotein binding  intermediate filament  
NDEx NetworkKRTAP26-1
Atlas of Cancer Signalling NetworkKRTAP26-1
Wikipedia pathwaysKRTAP26-1
Orthology - Evolution
OrthoDB388818
GeneTree (enSembl)ENSG00000197683
Phylogenetic Trees/Animal Genes : TreeFamKRTAP26-1
HOVERGENQ6PEX3
HOGENOMQ6PEX3
Homologs : HomoloGeneKRTAP26-1
Homology/Alignments : Family Browser (UCSC)KRTAP26-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP26-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP26-1
dbVarKRTAP26-1
ClinVarKRTAP26-1
1000_GenomesKRTAP26-1 
Exome Variant ServerKRTAP26-1
ExAC (Exome Aggregation Consortium)KRTAP26-1 (select the gene name)
Genetic variants : HAPMAP388818
Genomic Variants (DGV)KRTAP26-1 [DGVbeta]
DECIPHER (Syndromes)21:31691450-31692607  ENSG00000197683
CONAN: Copy Number AnalysisKRTAP26-1 
Mutations
ICGC Data PortalKRTAP26-1 
TCGA Data PortalKRTAP26-1 
Broad Tumor PortalKRTAP26-1
OASIS PortalKRTAP26-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP26-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP26-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP26-1
DgiDB (Drug Gene Interaction Database)KRTAP26-1
DoCM (Curated mutations)KRTAP26-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP26-1 (select a term)
intoGenKRTAP26-1
Cancer3DKRTAP26-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP26-1
Genetic Testing Registry KRTAP26-1
NextProtQ6PEX3 [Medical]
TSGene388818
GENETestsKRTAP26-1
Huge Navigator KRTAP26-1 [HugePedia]
snp3D : Map Gene to Disease388818
BioCentury BCIQKRTAP26-1
ClinGenKRTAP26-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388818
Chemical/Pharm GKB GenePA162393763
Clinical trialKRTAP26-1
Miscellaneous
canSAR (ICR)KRTAP26-1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP26-1
EVEXKRTAP26-1
GoPubMedKRTAP26-1
iHOPKRTAP26-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:30 CET 2017

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