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KRTAP27-1 (keratin associated protein 27-1)

Identity

Other alias-
HGNC (Hugo) KRTAP27-1
LocusID (NCBI) 643812
Atlas_Id 65103
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30337013 and ends at 30337694 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP27-1   33864
Cards
Entrez_Gene (NCBI)KRTAP27-1  643812  keratin associated protein 27-1
Aliases
GeneCards (Weizmann)KRTAP27-1
Ensembl hg19 (Hinxton)ENSG00000206107 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206107 [Gene_View]  chr21:30337013-30337694 [Contig_View]  KRTAP27-1 [Vega]
ICGC DataPortalENSG00000206107
TCGA cBioPortalKRTAP27-1
AceView (NCBI)KRTAP27-1
Genatlas (Paris)KRTAP27-1
WikiGenes643812
SOURCE (Princeton)KRTAP27-1
Genetics Home Reference (NIH)KRTAP27-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP27-1  -     chr21:30337013-30337694 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP27-1  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP27-1 - 21q22.11 [CytoView hg19]  KRTAP27-1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP27-1 [Mapview hg19]  KRTAP27-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096937
RefSeq transcript (Entrez)NM_001077711
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP27-1
Cluster EST : UnigeneHs.580881 [ NCBI ]
CGAP (NCI)Hs.580881
Alternative Splicing GalleryENSG00000206107
Gene ExpressionKRTAP27-1 [ NCBI-GEO ]   KRTAP27-1 [ EBI - ARRAY_EXPRESS ]   KRTAP27-1 [ SEEK ]   KRTAP27-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP27-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643812
GTEX Portal (Tissue expression)KRTAP27-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI81
Splice isoforms : SwissVarQ3LI81
PhosPhoSitePlusQ3LI81
Domains : Interpro (EBI)KRTAP_PMG   
Domain families : Pfam (Sanger)PMG (PF05287)   
Domain families : Pfam (NCBI)pfam05287   
Conserved Domain (NCBI)KRTAP27-1
DMDM Disease mutations643812
Blocks (Seattle)KRTAP27-1
SuperfamilyQ3LI81
Human Protein AtlasENSG00000206107
Peptide AtlasQ3LI81
IPIIPI00654839   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI81
IntAct (EBI)Q3LI81
FunCoupENSG00000206107
BioGRIDKRTAP27-1
STRING (EMBL)KRTAP27-1
ZODIACKRTAP27-1
Ontologies - Pathways
QuickGOQ3LI81
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP27-1
Atlas of Cancer Signalling NetworkKRTAP27-1
Wikipedia pathwaysKRTAP27-1
Orthology - Evolution
OrthoDB643812
GeneTree (enSembl)ENSG00000206107
Phylogenetic Trees/Animal Genes : TreeFamKRTAP27-1
HOVERGENQ3LI81
HOGENOMQ3LI81
Homologs : HomoloGeneKRTAP27-1
Homology/Alignments : Family Browser (UCSC)KRTAP27-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP27-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP27-1
dbVarKRTAP27-1
ClinVarKRTAP27-1
1000_GenomesKRTAP27-1 
Exome Variant ServerKRTAP27-1
ExAC (Exome Aggregation Consortium)KRTAP27-1 (select the gene name)
Genetic variants : HAPMAP643812
Genomic Variants (DGV)KRTAP27-1 [DGVbeta]
DECIPHERKRTAP27-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP27-1 
Mutations
ICGC Data PortalKRTAP27-1 
TCGA Data PortalKRTAP27-1 
Broad Tumor PortalKRTAP27-1
OASIS PortalKRTAP27-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP27-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP27-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP27-1
DgiDB (Drug Gene Interaction Database)KRTAP27-1
DoCM (Curated mutations)KRTAP27-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP27-1 (select a term)
intoGenKRTAP27-1
Cancer3DKRTAP27-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP27-1
Genetic Testing Registry KRTAP27-1
NextProtQ3LI81 [Medical]
TSGene643812
GENETestsKRTAP27-1
Target ValidationKRTAP27-1
Huge Navigator KRTAP27-1 [HugePedia]
snp3D : Map Gene to Disease643812
BioCentury BCIQKRTAP27-1
ClinGenKRTAP27-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643812
Chemical/Pharm GKB GenePA162393770
Clinical trialKRTAP27-1
Miscellaneous
canSAR (ICR)KRTAP27-1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP27-1
EVEXKRTAP27-1
GoPubMedKRTAP27-1
iHOPKRTAP27-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:17 CEST 2017

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