Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP29-1 (keratin associated protein 29-1)

Identity

Alias_symbol (synonym)KAP29.2
Other alias
HGNC (Hugo) KRTAP29-1
LocusID (NCBI) 100533177
Atlas_Id 65104
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41301826 and ends at 41302851 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP29-1   34211
Cards
Entrez_Gene (NCBI)KRTAP29-1  100533177  keratin associated protein 29-1
AliasesKAP29.2
GeneCards (Weizmann)KRTAP29-1
Ensembl hg19 (Hinxton)ENSG00000212658 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212658 [Gene_View]  chr17:41301826-41302851 [Contig_View]  KRTAP29-1 [Vega]
ICGC DataPortalENSG00000212658
TCGA cBioPortalKRTAP29-1
AceView (NCBI)KRTAP29-1
Genatlas (Paris)KRTAP29-1
WikiGenes100533177
SOURCE (Princeton)KRTAP29-1
Genetics Home Reference (NIH)KRTAP29-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP29-1  -     chr17:41301826-41302851 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP29-1  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP29-1 - 17q21.2 [CytoView hg19]  KRTAP29-1 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP29-1 [Mapview hg19]  KRTAP29-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001257309
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP29-1
Cluster EST : UnigeneHs.744833 [ NCBI ]
CGAP (NCI)Hs.744833
Alternative Splicing GalleryENSG00000212658
Gene ExpressionKRTAP29-1 [ NCBI-GEO ]   KRTAP29-1 [ EBI - ARRAY_EXPRESS ]   KRTAP29-1 [ SEEK ]   KRTAP29-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP29-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100533177
GTEX Portal (Tissue expression)KRTAP29-1
Human Protein AtlasENSG00000212658-KRTAP29-1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MX34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MX34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MX34
Splice isoforms : SwissVarA8MX34
PhosPhoSitePlusA8MX34
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP29-1
DMDM Disease mutations100533177
Blocks (Seattle)KRTAP29-1
SuperfamilyA8MX34
Human Protein Atlas [tissue]ENSG00000212658-KRTAP29-1 [tissue]
Peptide AtlasA8MX34
IPIIPI00798164   
Protein Interaction databases
DIP (DOE-UCLA)A8MX34
IntAct (EBI)A8MX34
FunCoupENSG00000212658
BioGRIDKRTAP29-1
STRING (EMBL)KRTAP29-1
ZODIACKRTAP29-1
Ontologies - Pathways
QuickGOA8MX34
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP29-1
Atlas of Cancer Signalling NetworkKRTAP29-1
Wikipedia pathwaysKRTAP29-1
Orthology - Evolution
OrthoDB100533177
GeneTree (enSembl)ENSG00000212658
Phylogenetic Trees/Animal Genes : TreeFamKRTAP29-1
HOVERGENA8MX34
HOGENOMA8MX34
Homologs : HomoloGeneKRTAP29-1
Homology/Alignments : Family Browser (UCSC)KRTAP29-1
Gene fusions - Rearrangements
Tumor Fusion PortalKRTAP29-1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP29-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP29-1
dbVarKRTAP29-1
ClinVarKRTAP29-1
1000_GenomesKRTAP29-1 
Exome Variant ServerKRTAP29-1
ExAC (Exome Aggregation Consortium)ENSG00000212658
GNOMAD BrowserENSG00000212658
Genetic variants : HAPMAP100533177
Genomic Variants (DGV)KRTAP29-1 [DGVbeta]
DECIPHERKRTAP29-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP29-1 
Mutations
ICGC Data PortalKRTAP29-1 
TCGA Data PortalKRTAP29-1 
Broad Tumor PortalKRTAP29-1
OASIS PortalKRTAP29-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP29-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP29-1
BioMutasearch KRTAP29-1
DgiDB (Drug Gene Interaction Database)KRTAP29-1
DoCM (Curated mutations)KRTAP29-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP29-1 (select a term)
intoGenKRTAP29-1
Cancer3DKRTAP29-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETKRTAP29-1
MedgenKRTAP29-1
Genetic Testing Registry KRTAP29-1
NextProtA8MX34 [Medical]
TSGene100533177
GENETestsKRTAP29-1
Target ValidationKRTAP29-1
Huge Navigator KRTAP29-1 [HugePedia]
snp3D : Map Gene to Disease100533177
BioCentury BCIQKRTAP29-1
ClinGenKRTAP29-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100533177
Chemical/Pharm GKB GenePA165432061
Clinical trialKRTAP29-1
Miscellaneous
canSAR (ICR)KRTAP29-1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP29-1
EVEXKRTAP29-1
GoPubMedKRTAP29-1
iHOPKRTAP29-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:35:39 CET 2017

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