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KRTAP3-1 (keratin associated protein 3-1)

Identity

Alias_symbol (synonym)KAP3.1
Other aliasKRTAP3.1
HGNC (Hugo) KRTAP3-1
LocusID (NCBI) 83896
Atlas_Id 65105
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 39164774 and ends at 39165366 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP3-1   16778
Cards
Entrez_Gene (NCBI)KRTAP3-1  83896  keratin associated protein 3-1
AliasesKAP3.1; KRTAP3.1
GeneCards (Weizmann)KRTAP3-1
Ensembl hg19 (Hinxton)ENSG00000212901 [Gene_View]  chr17:39164774-39165366 [Contig_View]  KRTAP3-1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000212901 [Gene_View]  chr17:39164774-39165366 [Contig_View]  KRTAP3-1 [Vega]
ICGC DataPortalENSG00000212901
TCGA cBioPortalKRTAP3-1
AceView (NCBI)KRTAP3-1
Genatlas (Paris)KRTAP3-1
WikiGenes83896
SOURCE (Princeton)KRTAP3-1
Genetics Home Reference (NIH)KRTAP3-1
Genomic and cartography
GoldenPath hg19 (UCSC)KRTAP3-1  -     chr17:39164774-39165366 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRTAP3-1  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblKRTAP3-1 - 17q21.2 [CytoView hg19]  KRTAP3-1 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP3-1 [Mapview hg19]  KRTAP3-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406931 BC113077 BC113078
RefSeq transcript (Entrez)NM_031958
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_003871091 NW_004929407
Consensus coding sequences : CCDS (NCBI)KRTAP3-1
Cluster EST : UnigeneHs.307027 [ NCBI ]
CGAP (NCI)Hs.307027
Alternative Splicing GalleryENSG00000212901
Gene ExpressionKRTAP3-1 [ NCBI-GEO ]   KRTAP3-1 [ EBI - ARRAY_EXPRESS ]   KRTAP3-1 [ SEEK ]   KRTAP3-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP3-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83896
GTEX Portal (Tissue expression)KRTAP3-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYR8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYR8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYR8
Splice isoforms : SwissVarQ9BYR8
PhosPhoSitePlusQ9BYR8
Domains : Interpro (EBI)Keratin_matx   
Domain families : Pfam (Sanger)Keratin_matx (PF04579)   
Domain families : Pfam (NCBI)pfam04579   
Domain structure : Prodom (Prabi Lyon)Keratin_matx (PD010562)   
Conserved Domain (NCBI)KRTAP3-1
DMDM Disease mutations83896
Blocks (Seattle)KRTAP3-1
SuperfamilyQ9BYR8
Human Protein AtlasENSG00000212901
Peptide AtlasQ9BYR8
HPRD13937
IPIIPI00011212   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYR8
IntAct (EBI)Q9BYR8
FunCoupENSG00000212901
BioGRIDKRTAP3-1
STRING (EMBL)KRTAP3-1
ZODIACKRTAP3-1
Ontologies - Pathways
QuickGOQ9BYR8
Ontology : AmiGOstructural molecule activity  protein binding  keratin filament  
Ontology : EGO-EBIstructural molecule activity  protein binding  keratin filament  
NDEx NetworkKRTAP3-1
Atlas of Cancer Signalling NetworkKRTAP3-1
Wikipedia pathwaysKRTAP3-1
Orthology - Evolution
OrthoDB83896
GeneTree (enSembl)ENSG00000212901
Phylogenetic Trees/Animal Genes : TreeFamKRTAP3-1
HOVERGENQ9BYR8
HOGENOMQ9BYR8
Homologs : HomoloGeneKRTAP3-1
Homology/Alignments : Family Browser (UCSC)KRTAP3-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP3-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP3-1
dbVarKRTAP3-1
ClinVarKRTAP3-1
1000_GenomesKRTAP3-1 
Exome Variant ServerKRTAP3-1
ExAC (Exome Aggregation Consortium)KRTAP3-1 (select the gene name)
Genetic variants : HAPMAP83896
Genomic Variants (DGV)KRTAP3-1 [DGVbeta]
DECIPHER (Syndromes)17:39164774-39165366  ENSG00000212901
CONAN: Copy Number AnalysisKRTAP3-1 
Mutations
ICGC Data PortalKRTAP3-1 
TCGA Data PortalKRTAP3-1 
Broad Tumor PortalKRTAP3-1
OASIS PortalKRTAP3-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP3-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP3-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP3-1
DgiDB (Drug Gene Interaction Database)KRTAP3-1
DoCM (Curated mutations)KRTAP3-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP3-1 (select a term)
intoGenKRTAP3-1
Cancer3DKRTAP3-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP3-1
Genetic Testing Registry KRTAP3-1
NextProtQ9BYR8 [Medical]
TSGene83896
GENETestsKRTAP3-1
Huge Navigator KRTAP3-1 [HugePedia]
snp3D : Map Gene to Disease83896
BioCentury BCIQKRTAP3-1
ClinGenKRTAP3-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83896
Chemical/Pharm GKB GenePA38418
Clinical trialKRTAP3-1
Miscellaneous
canSAR (ICR)KRTAP3-1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP3-1
EVEXKRTAP3-1
GoPubMedKRTAP3-1
iHOPKRTAP3-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:31 CET 2017

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