Atlas of Genetics and Cytogenetics in Oncology and Haematology

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KRTAP3-2 (keratin associated protein 3-2)

Identity

Alias (NCBI)KAP3.2
KRTAP3.2
HGNC (Hugo) KRTAP3-2
HGNC Alias symbKAP3.2
LocusID (NCBI) 83897
Atlas_Id 65106
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 40999193 and ends at 40999886 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KRTAP3-2   16779
Cards
Entrez_Gene (NCBI)KRTAP3-2    keratin associated protein 3-2
AliasesKAP3.2; KRTAP3.2
GeneCards (Weizmann)KRTAP3-2
Ensembl hg19 (Hinxton)ENSG00000212900 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212900 [Gene_View]  ENSG00000212900 [Sequence]  chr17:40999193-40999886 [Contig_View]  KRTAP3-2 [Vega]
ICGC DataPortalENSG00000212900
TCGA cBioPortalKRTAP3-2
AceView (NCBI)KRTAP3-2
Genatlas (Paris)KRTAP3-2
SOURCE (Princeton)KRTAP3-2
Genetics Home Reference (NIH)KRTAP3-2
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP3-2  -     chr17:40999193-40999886 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP3-2  -     17q21.2   [Description]    (hg19-Feb_2009)
GoldenPathKRTAP3-2 - 17q21.2 [CytoView hg19]  KRTAP3-2 - 17q21.2 [CytoView hg38]
ImmunoBaseENSG00000212900
genome Data Viewer NCBIKRTAP3-2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ406932 BC034582
RefSeq transcript (Entrez)NM_031959
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP3-2
Alternative Splicing GalleryENSG00000212900
Gene ExpressionKRTAP3-2 [ NCBI-GEO ]   KRTAP3-2 [ EBI - ARRAY_EXPRESS ]   KRTAP3-2 [ SEEK ]   KRTAP3-2 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP3-2 [ Firebrowse - Broad ]
GenevisibleExpression of KRTAP3-2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83897
GTEX Portal (Tissue expression)KRTAP3-2
Human Protein AtlasENSG00000212900-KRTAP3-2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYR7
Splice isoforms : SwissVarQ9BYR7
PhosPhoSitePlusQ9BYR7
Domains : Interpro (EBI)Keratin_matx   
Domain families : Pfam (Sanger)Keratin_matx (PF04579)   
Domain families : Pfam (NCBI)pfam04579   
Conserved Domain (NCBI)KRTAP3-2
Blocks (Seattle)KRTAP3-2
SuperfamilyQ9BYR7
Human Protein Atlas [tissue]ENSG00000212900-KRTAP3-2 [tissue]
Peptide AtlasQ9BYR7
HPRD13938
IPIIPI00011214   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYR7
IntAct (EBI)Q9BYR7
BioGRIDKRTAP3-2
STRING (EMBL)KRTAP3-2
ZODIACKRTAP3-2
Ontologies - Pathways
QuickGOQ9BYR7
Ontology : AmiGOstructural molecule activity  protein binding  cytosol  keratinization  keratin filament  
Ontology : EGO-EBIstructural molecule activity  protein binding  cytosol  keratinization  keratin filament  
NDEx NetworkKRTAP3-2
Atlas of Cancer Signalling NetworkKRTAP3-2
Wikipedia pathwaysKRTAP3-2
Orthology - Evolution
OrthoDB83897
GeneTree (enSembl)ENSG00000212900
Phylogenetic Trees/Animal Genes : TreeFamKRTAP3-2
HOGENOMQ9BYR7
Homologs : HomoloGeneKRTAP3-2
Homology/Alignments : Family Browser (UCSC)KRTAP3-2
Gene fusions - Rearrangements
Fusion : QuiverKRTAP3-2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP3-2 [hg38]
dbVarKRTAP3-2
ClinVarKRTAP3-2
MonarchKRTAP3-2
1000_GenomesKRTAP3-2 
Exome Variant ServerKRTAP3-2
GNOMAD BrowserENSG00000212900
Varsome BrowserKRTAP3-2
Genomic Variants (DGV)KRTAP3-2 [DGVbeta]
DECIPHERKRTAP3-2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP3-2 
Mutations
ICGC Data PortalKRTAP3-2 
TCGA Data PortalKRTAP3-2 
Broad Tumor PortalKRTAP3-2
OASIS PortalKRTAP3-2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP3-2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DKRTAP3-2
Mutations and Diseases : HGMDKRTAP3-2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP3-2
DgiDB (Drug Gene Interaction Database)KRTAP3-2
DoCM (Curated mutations)KRTAP3-2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP3-2 (select a term)
intoGenKRTAP3-2
Cancer3DKRTAP3-2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETKRTAP3-2
MedgenKRTAP3-2
Genetic Testing Registry KRTAP3-2
NextProtQ9BYR7 [Medical]
GENETestsKRTAP3-2
Target ValidationKRTAP3-2
Huge Navigator KRTAP3-2 [HugePedia]
ClinGenKRTAP3-2
Clinical trials, drugs, therapy
MyCancerGenomeKRTAP3-2
Protein Interactions : CTD
Pharm GKB GenePA38419
Clinical trialKRTAP3-2
Miscellaneous
canSAR (ICR)KRTAP3-2 (select the gene name)
HarmonizomeKRTAP3-2
DataMed IndexKRTAP3-2
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP3-2
EVEXKRTAP3-2
GoPubMedKRTAP3-2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:59:22 CET 2020
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