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KRTAP3-3 (keratin associated protein 3-3)

Identity

Alias_symbol (synonym)KAP3.3
Other aliasKRTAP3.3
HGNC (Hugo) KRTAP3-3
LocusID (NCBI) 85293
Atlas_Id 65107
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 40993430 and ends at 40994133 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP3-3   18890
Cards
Entrez_Gene (NCBI)KRTAP3-3  85293  keratin associated protein 3-3
AliasesKAP3.3; KRTAP3.3
GeneCards (Weizmann)KRTAP3-3
Ensembl hg19 (Hinxton)ENSG00000212899 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212899 [Gene_View]  chr17:40993430-40994133 [Contig_View]  KRTAP3-3 [Vega]
ICGC DataPortalENSG00000212899
TCGA cBioPortalKRTAP3-3
AceView (NCBI)KRTAP3-3
Genatlas (Paris)KRTAP3-3
WikiGenes85293
SOURCE (Princeton)KRTAP3-3
Genetics Home Reference (NIH)KRTAP3-3
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP3-3  -     chr17:40993430-40994133 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP3-3  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP3-3 - 17q21.2 [CytoView hg19]  KRTAP3-3 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP3-3 [Mapview hg19]  KRTAP3-3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406933 BC069099 BC069448 BC093845 BC093847
RefSeq transcript (Entrez)NM_033185
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP3-3
Cluster EST : UnigeneHs.662759 [ NCBI ]
CGAP (NCI)Hs.662759
Alternative Splicing GalleryENSG00000212899
Gene ExpressionKRTAP3-3 [ NCBI-GEO ]   KRTAP3-3 [ EBI - ARRAY_EXPRESS ]   KRTAP3-3 [ SEEK ]   KRTAP3-3 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP3-3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85293
GTEX Portal (Tissue expression)KRTAP3-3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYR6
Splice isoforms : SwissVarQ9BYR6
PhosPhoSitePlusQ9BYR6
Domains : Interpro (EBI)Keratin_matx   
Domain families : Pfam (Sanger)Keratin_matx (PF04579)   
Domain families : Pfam (NCBI)pfam04579   
Domain structure : Prodom (Prabi Lyon)Keratin_matx (PD010562)   
Conserved Domain (NCBI)KRTAP3-3
DMDM Disease mutations85293
Blocks (Seattle)KRTAP3-3
SuperfamilyQ9BYR6
Human Protein AtlasENSG00000212899
Peptide AtlasQ9BYR6
HPRD13939
IPIIPI00013267   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYR6
IntAct (EBI)Q9BYR6
FunCoupENSG00000212899
BioGRIDKRTAP3-3
STRING (EMBL)KRTAP3-3
ZODIACKRTAP3-3
Ontologies - Pathways
QuickGOQ9BYR6
Ontology : AmiGOstructural molecule activity  protein binding  cytosol  keratinization  keratin filament  
Ontology : EGO-EBIstructural molecule activity  protein binding  cytosol  keratinization  keratin filament  
NDEx NetworkKRTAP3-3
Atlas of Cancer Signalling NetworkKRTAP3-3
Wikipedia pathwaysKRTAP3-3
Orthology - Evolution
OrthoDB85293
GeneTree (enSembl)ENSG00000212899
Phylogenetic Trees/Animal Genes : TreeFamKRTAP3-3
HOVERGENQ9BYR6
HOGENOMQ9BYR6
Homologs : HomoloGeneKRTAP3-3
Homology/Alignments : Family Browser (UCSC)KRTAP3-3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP3-3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP3-3
dbVarKRTAP3-3
ClinVarKRTAP3-3
1000_GenomesKRTAP3-3 
Exome Variant ServerKRTAP3-3
ExAC (Exome Aggregation Consortium)KRTAP3-3 (select the gene name)
Genetic variants : HAPMAP85293
Genomic Variants (DGV)KRTAP3-3 [DGVbeta]
DECIPHERKRTAP3-3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP3-3 
Mutations
ICGC Data PortalKRTAP3-3 
TCGA Data PortalKRTAP3-3 
Broad Tumor PortalKRTAP3-3
OASIS PortalKRTAP3-3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP3-3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP3-3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP3-3
DgiDB (Drug Gene Interaction Database)KRTAP3-3
DoCM (Curated mutations)KRTAP3-3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP3-3 (select a term)
intoGenKRTAP3-3
Cancer3DKRTAP3-3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP3-3
Genetic Testing Registry KRTAP3-3
NextProtQ9BYR6 [Medical]
TSGene85293
GENETestsKRTAP3-3
Target ValidationKRTAP3-3
Huge Navigator KRTAP3-3 [HugePedia]
snp3D : Map Gene to Disease85293
BioCentury BCIQKRTAP3-3
ClinGenKRTAP3-3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85293
Chemical/Pharm GKB GenePA38742
Clinical trialKRTAP3-3
Miscellaneous
canSAR (ICR)KRTAP3-3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP3-3
EVEXKRTAP3-3
GoPubMedKRTAP3-3
iHOPKRTAP3-3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:21 CEST 2017

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