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KRTAP4-1 (keratin associated protein 4-1)

Identity

Alias_namesKRTAP4-10
keratin associated protein 4-10
Alias_symbol (synonym)KAP4.1
KAP4.10
Other aliasKRTAP4.10
HGNC (Hugo) KRTAP4-1
LocusID (NCBI) 85285
Atlas_Id 65108
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41184100 and ends at 41184895 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP4-1   18907
Cards
Entrez_Gene (NCBI)KRTAP4-1  85285  keratin associated protein 4-1
AliasesKAP4.1; KAP4.10; KRTAP4-10; KRTAP4.10
GeneCards (Weizmann)KRTAP4-1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:41184100-41184895 [Contig_View]  KRTAP4-1 [Vega]
TCGA cBioPortalKRTAP4-1
AceView (NCBI)KRTAP4-1
Genatlas (Paris)KRTAP4-1
WikiGenes85285
SOURCE (Princeton)KRTAP4-1
Genetics Home Reference (NIH)KRTAP4-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP4-1  -     chr17:41184100-41184895 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP4-1  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP4-1 - 17q21.2 [CytoView hg19]  KRTAP4-1 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP4-1 [Mapview hg19]  KRTAP4-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406942 BC065372 BC103845 BC103846
RefSeq transcript (Entrez)NM_033060
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP4-1
Cluster EST : UnigeneHs.437079 [ NCBI ]
CGAP (NCI)Hs.437079
Gene ExpressionKRTAP4-1 [ NCBI-GEO ]   KRTAP4-1 [ EBI - ARRAY_EXPRESS ]   KRTAP4-1 [ SEEK ]   KRTAP4-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP4-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85285
GTEX Portal (Tissue expression)KRTAP4-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYQ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYQ7
Splice isoforms : SwissVarQ9BYQ7
PhosPhoSitePlusQ9BYQ7
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP4-1
DMDM Disease mutations85285
Blocks (Seattle)KRTAP4-1
SuperfamilyQ9BYQ7
Peptide AtlasQ9BYQ7
HPRD13940
IPIIPI00011478   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYQ7
IntAct (EBI)Q9BYQ7
BioGRIDKRTAP4-1
STRING (EMBL)KRTAP4-1
ZODIACKRTAP4-1
Ontologies - Pathways
QuickGOQ9BYQ7
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP4-1
Atlas of Cancer Signalling NetworkKRTAP4-1
Wikipedia pathwaysKRTAP4-1
Orthology - Evolution
OrthoDB85285
Phylogenetic Trees/Animal Genes : TreeFamKRTAP4-1
HOVERGENQ9BYQ7
HOGENOMQ9BYQ7
Homologs : HomoloGeneKRTAP4-1
Homology/Alignments : Family Browser (UCSC)KRTAP4-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP4-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP4-1
dbVarKRTAP4-1
ClinVarKRTAP4-1
1000_GenomesKRTAP4-1 
Exome Variant ServerKRTAP4-1
ExAC (Exome Aggregation Consortium)KRTAP4-1 (select the gene name)
Genetic variants : HAPMAP85285
Genomic Variants (DGV)KRTAP4-1 [DGVbeta]
DECIPHERKRTAP4-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP4-1 
Mutations
ICGC Data PortalKRTAP4-1 
TCGA Data PortalKRTAP4-1 
Broad Tumor PortalKRTAP4-1
OASIS PortalKRTAP4-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP4-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP4-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP4-1
DgiDB (Drug Gene Interaction Database)KRTAP4-1
DoCM (Curated mutations)KRTAP4-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP4-1 (select a term)
intoGenKRTAP4-1
Cancer3DKRTAP4-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP4-1
Genetic Testing Registry KRTAP4-1
NextProtQ9BYQ7 [Medical]
TSGene85285
GENETestsKRTAP4-1
Target ValidationKRTAP4-1
Huge Navigator KRTAP4-1 [HugePedia]
snp3D : Map Gene to Disease85285
BioCentury BCIQKRTAP4-1
ClinGenKRTAP4-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85285
Chemical/Pharm GKB GenePA38755
Clinical trialKRTAP4-1
Miscellaneous
canSAR (ICR)KRTAP4-1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP4-1
EVEXKRTAP4-1
GoPubMedKRTAP4-1
iHOPKRTAP4-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:18 CEST 2017

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