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KRTAP4-11 (keratin associated protein 4-11)

Identity

Alias_namesKRTAP4-14
keratin associated protein 4-14
Alias_symbol (synonym)KAP4.11
KAP4.14
Other aliasKRTAP4.14
HGNC (Hugo) KRTAP4-11
LocusID (NCBI) 653240
Atlas_Id 65109
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 39273434 and ends at 39274606 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP4-11   18911
Cards
Entrez_Gene (NCBI)KRTAP4-11  653240  keratin associated protein 4-11
AliasesKAP4.11; KAP4.14; KRTAP4-14; KRTAP4.14
GeneCards (Weizmann)KRTAP4-11
Ensembl hg19 (Hinxton)ENSG00000212721 [Gene_View]  chr17:39273434-39274606 [Contig_View]  KRTAP4-11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000212721 [Gene_View]  chr17:39273434-39274606 [Contig_View]  KRTAP4-11 [Vega]
ICGC DataPortalENSG00000212721
TCGA cBioPortalKRTAP4-11
AceView (NCBI)KRTAP4-11
Genatlas (Paris)KRTAP4-11
WikiGenes653240
SOURCE (Princeton)KRTAP4-11
Genetics Home Reference (NIH)KRTAP4-11
Genomic and cartography
GoldenPath hg19 (UCSC)KRTAP4-11  -     chr17:39273434-39274606 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRTAP4-11  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblKRTAP4-11 - 17q21.2 [CytoView hg19]  KRTAP4-11 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP4-11 [Mapview hg19]  KRTAP4-11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406944 BC126131 BC130562
RefSeq transcript (Entrez)NM_033059
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_003871091 NW_004929407
Consensus coding sequences : CCDS (NCBI)KRTAP4-11
Cluster EST : UnigeneHs.307015 [ NCBI ]
CGAP (NCI)Hs.307015
Alternative Splicing GalleryENSG00000212721
Gene ExpressionKRTAP4-11 [ NCBI-GEO ]   KRTAP4-11 [ EBI - ARRAY_EXPRESS ]   KRTAP4-11 [ SEEK ]   KRTAP4-11 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP4-11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653240
GTEX Portal (Tissue expression)KRTAP4-11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYQ6
Splice isoforms : SwissVarQ9BYQ6
PhosPhoSitePlusQ9BYQ6
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP4-11
DMDM Disease mutations653240
Blocks (Seattle)KRTAP4-11
SuperfamilyQ9BYQ6
Human Protein AtlasENSG00000212721
Peptide AtlasQ9BYQ6
IPIIPI00011474   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYQ6
IntAct (EBI)Q9BYQ6
FunCoupENSG00000212721
BioGRIDKRTAP4-11
STRING (EMBL)KRTAP4-11
ZODIACKRTAP4-11
Ontologies - Pathways
QuickGOQ9BYQ6
Ontology : AmiGOprotein binding  keratin filament  
Ontology : EGO-EBIprotein binding  keratin filament  
NDEx NetworkKRTAP4-11
Atlas of Cancer Signalling NetworkKRTAP4-11
Wikipedia pathwaysKRTAP4-11
Orthology - Evolution
OrthoDB653240
GeneTree (enSembl)ENSG00000212721
Phylogenetic Trees/Animal Genes : TreeFamKRTAP4-11
HOVERGENQ9BYQ6
HOGENOMQ9BYQ6
Homologs : HomoloGeneKRTAP4-11
Homology/Alignments : Family Browser (UCSC)KRTAP4-11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP4-11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP4-11
dbVarKRTAP4-11
ClinVarKRTAP4-11
1000_GenomesKRTAP4-11 
Exome Variant ServerKRTAP4-11
ExAC (Exome Aggregation Consortium)KRTAP4-11 (select the gene name)
Genetic variants : HAPMAP653240
Genomic Variants (DGV)KRTAP4-11 [DGVbeta]
DECIPHER (Syndromes)17:39273434-39274606  ENSG00000212721
CONAN: Copy Number AnalysisKRTAP4-11 
Mutations
ICGC Data PortalKRTAP4-11 
TCGA Data PortalKRTAP4-11 
Broad Tumor PortalKRTAP4-11
OASIS PortalKRTAP4-11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP4-11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP4-11
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch KRTAP4-11
DgiDB (Drug Gene Interaction Database)KRTAP4-11
DoCM (Curated mutations)KRTAP4-11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP4-11 (select a term)
intoGenKRTAP4-11
Cancer3DKRTAP4-11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP4-11
Genetic Testing Registry KRTAP4-11
NextProtQ9BYQ6 [Medical]
TSGene653240
GENETestsKRTAP4-11
Huge Navigator KRTAP4-11 [HugePedia]
snp3D : Map Gene to Disease653240
BioCentury BCIQKRTAP4-11
ClinGenKRTAP4-11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653240
Chemical/Pharm GKB GenePA38759
Clinical trialKRTAP4-11
Miscellaneous
canSAR (ICR)KRTAP4-11 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP4-11
EVEXKRTAP4-11
GoPubMedKRTAP4-11
iHOPKRTAP4-11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:32 CET 2017

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