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KRTAP4-12 (keratin associated protein 4-12)

Identity

Alias_symbol (synonym)KAP4.12
Other aliasKRTAP4.12
HGNC (Hugo) KRTAP4-12
LocusID (NCBI) 83755
Atlas_Id 65110
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41123091 and ends at 41124167 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP4-12   16776
Cards
Entrez_Gene (NCBI)KRTAP4-12  83755  keratin associated protein 4-12
AliasesKAP4.12; KRTAP4.12
GeneCards (Weizmann)KRTAP4-12
Ensembl hg19 (Hinxton)ENSG00000213416 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213416 [Gene_View]  chr17:41123091-41124167 [Contig_View]  KRTAP4-12 [Vega]
ICGC DataPortalENSG00000213416
TCGA cBioPortalKRTAP4-12
AceView (NCBI)KRTAP4-12
Genatlas (Paris)KRTAP4-12
WikiGenes83755
SOURCE (Princeton)KRTAP4-12
Genetics Home Reference (NIH)KRTAP4-12
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP4-12  -     chr17:41123091-41124167 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP4-12  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP4-12 - 17q21.2 [CytoView hg19]  KRTAP4-12 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP4-12 [Mapview hg19]  KRTAP4-12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406943 BC004180 BC004212 BC101159 BC101160
RefSeq transcript (Entrez)NM_031854
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP4-12
Cluster EST : UnigeneHs.572443 [ NCBI ]
CGAP (NCI)Hs.572443
Alternative Splicing GalleryENSG00000213416
Gene ExpressionKRTAP4-12 [ NCBI-GEO ]   KRTAP4-12 [ EBI - ARRAY_EXPRESS ]   KRTAP4-12 [ SEEK ]   KRTAP4-12 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP4-12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83755
GTEX Portal (Tissue expression)KRTAP4-12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ66   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ66  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ66
Splice isoforms : SwissVarQ9BQ66
PhosPhoSitePlusQ9BQ66
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP4-12
DMDM Disease mutations83755
Blocks (Seattle)KRTAP4-12
SuperfamilyQ9BQ66
Human Protein AtlasENSG00000213416
Peptide AtlasQ9BQ66
HPRD13941
IPIIPI01008953   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ66
IntAct (EBI)Q9BQ66
FunCoupENSG00000213416
BioGRIDKRTAP4-12
STRING (EMBL)KRTAP4-12
ZODIACKRTAP4-12
Ontologies - Pathways
QuickGOQ9BQ66
Ontology : AmiGOprotein binding  keratin filament  
Ontology : EGO-EBIprotein binding  keratin filament  
NDEx NetworkKRTAP4-12
Atlas of Cancer Signalling NetworkKRTAP4-12
Wikipedia pathwaysKRTAP4-12
Orthology - Evolution
OrthoDB83755
GeneTree (enSembl)ENSG00000213416
Phylogenetic Trees/Animal Genes : TreeFamKRTAP4-12
HOVERGENQ9BQ66
HOGENOMQ9BQ66
Homologs : HomoloGeneKRTAP4-12
Homology/Alignments : Family Browser (UCSC)KRTAP4-12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP4-12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP4-12
dbVarKRTAP4-12
ClinVarKRTAP4-12
1000_GenomesKRTAP4-12 
Exome Variant ServerKRTAP4-12
ExAC (Exome Aggregation Consortium)KRTAP4-12 (select the gene name)
Genetic variants : HAPMAP83755
Genomic Variants (DGV)KRTAP4-12 [DGVbeta]
DECIPHERKRTAP4-12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP4-12 
Mutations
ICGC Data PortalKRTAP4-12 
TCGA Data PortalKRTAP4-12 
Broad Tumor PortalKRTAP4-12
OASIS PortalKRTAP4-12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP4-12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP4-12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP4-12
DgiDB (Drug Gene Interaction Database)KRTAP4-12
DoCM (Curated mutations)KRTAP4-12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP4-12 (select a term)
intoGenKRTAP4-12
Cancer3DKRTAP4-12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP4-12
Genetic Testing Registry KRTAP4-12
NextProtQ9BQ66 [Medical]
TSGene83755
GENETestsKRTAP4-12
Target ValidationKRTAP4-12
Huge Navigator KRTAP4-12 [HugePedia]
snp3D : Map Gene to Disease83755
BioCentury BCIQKRTAP4-12
ClinGenKRTAP4-12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83755
Chemical/Pharm GKB GenePA38416
Clinical trialKRTAP4-12
Miscellaneous
canSAR (ICR)KRTAP4-12 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP4-12
EVEXKRTAP4-12
GoPubMedKRTAP4-12
iHOPKRTAP4-12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:18 CEST 2017

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