Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP4-2 (keratin associated protein 4-2)

Identity

Alias_symbol (synonym)KAP4.2
Other aliasKRTAP4.2
HGNC (Hugo) KRTAP4-2
LocusID (NCBI) 85291
Atlas_Id 65111
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41177446 and ends at 41178208 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP4-2   18900
Cards
Entrez_Gene (NCBI)KRTAP4-2  85291  keratin associated protein 4-2
AliasesKAP4.2; KRTAP4.2
GeneCards (Weizmann)KRTAP4-2
Ensembl hg19 (Hinxton)ENSG00000244537 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244537 [Gene_View]  chr17:41177446-41178208 [Contig_View]  KRTAP4-2 [Vega]
ICGC DataPortalENSG00000244537
TCGA cBioPortalKRTAP4-2
AceView (NCBI)KRTAP4-2
Genatlas (Paris)KRTAP4-2
WikiGenes85291
SOURCE (Princeton)KRTAP4-2
Genetics Home Reference (NIH)KRTAP4-2
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP4-2  -     chr17:41177446-41178208 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP4-2  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP4-2 - 17q21.2 [CytoView hg19]  KRTAP4-2 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP4-2 [Mapview hg19]  KRTAP4-2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406934 BC127252
RefSeq transcript (Entrez)NM_033062
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP4-2
Cluster EST : UnigeneHs.380165 [ NCBI ]
CGAP (NCI)Hs.380165
Alternative Splicing GalleryENSG00000244537
Gene ExpressionKRTAP4-2 [ NCBI-GEO ]   KRTAP4-2 [ EBI - ARRAY_EXPRESS ]   KRTAP4-2 [ SEEK ]   KRTAP4-2 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP4-2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85291
GTEX Portal (Tissue expression)KRTAP4-2
Human Protein AtlasENSG00000244537-KRTAP4-2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYR5
Splice isoforms : SwissVarQ9BYR5
PhosPhoSitePlusQ9BYR5
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP4-2
DMDM Disease mutations85291
Blocks (Seattle)KRTAP4-2
SuperfamilyQ9BYR5
Human Protein Atlas [tissue]ENSG00000244537-KRTAP4-2 [tissue]
Peptide AtlasQ9BYR5
HPRD13944
IPIIPI00011493   IPI00941936   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYR5
IntAct (EBI)Q9BYR5
FunCoupENSG00000244537
BioGRIDKRTAP4-2
STRING (EMBL)KRTAP4-2
ZODIACKRTAP4-2
Ontologies - Pathways
QuickGOQ9BYR5
Ontology : AmiGOprotein binding  cytosol  keratinization  keratin filament  
Ontology : EGO-EBIprotein binding  cytosol  keratinization  keratin filament  
NDEx NetworkKRTAP4-2
Atlas of Cancer Signalling NetworkKRTAP4-2
Wikipedia pathwaysKRTAP4-2
Orthology - Evolution
OrthoDB85291
GeneTree (enSembl)ENSG00000244537
Phylogenetic Trees/Animal Genes : TreeFamKRTAP4-2
HOVERGENQ9BYR5
HOGENOMQ9BYR5
Homologs : HomoloGeneKRTAP4-2
Homology/Alignments : Family Browser (UCSC)KRTAP4-2
Gene fusions - Rearrangements
Fusion: Tumor Portal KRTAP4-2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP4-2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP4-2
dbVarKRTAP4-2
ClinVarKRTAP4-2
1000_GenomesKRTAP4-2 
Exome Variant ServerKRTAP4-2
ExAC (Exome Aggregation Consortium)ENSG00000244537
GNOMAD BrowserENSG00000244537
Genetic variants : HAPMAP85291
Genomic Variants (DGV)KRTAP4-2 [DGVbeta]
DECIPHERKRTAP4-2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP4-2 
Mutations
ICGC Data PortalKRTAP4-2 
TCGA Data PortalKRTAP4-2 
Broad Tumor PortalKRTAP4-2
OASIS PortalKRTAP4-2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP4-2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP4-2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP4-2
DgiDB (Drug Gene Interaction Database)KRTAP4-2
DoCM (Curated mutations)KRTAP4-2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP4-2 (select a term)
intoGenKRTAP4-2
Cancer3DKRTAP4-2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP4-2
Genetic Testing Registry KRTAP4-2
NextProtQ9BYR5 [Medical]
TSGene85291
GENETestsKRTAP4-2
Target ValidationKRTAP4-2
Huge Navigator KRTAP4-2 [HugePedia]
snp3D : Map Gene to Disease85291
BioCentury BCIQKRTAP4-2
ClinGenKRTAP4-2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85291
Chemical/Pharm GKB GenePA38749
Clinical trialKRTAP4-2
Miscellaneous
canSAR (ICR)KRTAP4-2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP4-2
EVEXKRTAP4-2
GoPubMedKRTAP4-2
iHOPKRTAP4-2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:53:10 CET 2017

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