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KRTAP4-3 (keratin associated protein 4-3)

Identity

Alias_symbol (synonym)KAP4.3
Other alias
HGNC (Hugo) KRTAP4-3
LocusID (NCBI) 85290
Atlas_Id 65112
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41167231 and ends at 41168172 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP4-3   18908
Cards
Entrez_Gene (NCBI)KRTAP4-3  85290  keratin associated protein 4-3
AliasesKAP4.3
GeneCards (Weizmann)KRTAP4-3
Ensembl hg19 (Hinxton)ENSG00000196156 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196156 [Gene_View]  chr17:41167231-41168172 [Contig_View]  KRTAP4-3 [Vega]
ICGC DataPortalENSG00000196156
TCGA cBioPortalKRTAP4-3
AceView (NCBI)KRTAP4-3
Genatlas (Paris)KRTAP4-3
WikiGenes85290
SOURCE (Princeton)KRTAP4-3
Genetics Home Reference (NIH)KRTAP4-3
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP4-3  -     chr17:41167231-41168172 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP4-3  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP4-3 - 17q21.2 [CytoView hg19]  KRTAP4-3 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP4-3 [Mapview hg19]  KRTAP4-3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406935
RefSeq transcript (Entrez)NM_033187
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP4-3
Cluster EST : UnigeneHs.307023 [ NCBI ]
CGAP (NCI)Hs.307023
Alternative Splicing GalleryENSG00000196156
Gene ExpressionKRTAP4-3 [ NCBI-GEO ]   KRTAP4-3 [ EBI - ARRAY_EXPRESS ]   KRTAP4-3 [ SEEK ]   KRTAP4-3 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP4-3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85290
GTEX Portal (Tissue expression)KRTAP4-3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYR4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYR4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYR4
Splice isoforms : SwissVarQ9BYR4
PhosPhoSitePlusQ9BYR4
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP4-3
DMDM Disease mutations85290
Blocks (Seattle)KRTAP4-3
SuperfamilyQ9BYR4
Human Protein AtlasENSG00000196156
Peptide AtlasQ9BYR4
IPIIPI00457200   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYR4
IntAct (EBI)Q9BYR4
FunCoupENSG00000196156
BioGRIDKRTAP4-3
STRING (EMBL)KRTAP4-3
ZODIACKRTAP4-3
Ontologies - Pathways
QuickGOQ9BYR4
Ontology : AmiGOcytosol  aging  keratinization  hair cycle  keratin filament  
Ontology : EGO-EBIcytosol  aging  keratinization  hair cycle  keratin filament  
NDEx NetworkKRTAP4-3
Atlas of Cancer Signalling NetworkKRTAP4-3
Wikipedia pathwaysKRTAP4-3
Orthology - Evolution
OrthoDB85290
GeneTree (enSembl)ENSG00000196156
Phylogenetic Trees/Animal Genes : TreeFamKRTAP4-3
HOVERGENQ9BYR4
HOGENOMQ9BYR4
Homologs : HomoloGeneKRTAP4-3
Homology/Alignments : Family Browser (UCSC)KRTAP4-3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP4-3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP4-3
dbVarKRTAP4-3
ClinVarKRTAP4-3
1000_GenomesKRTAP4-3 
Exome Variant ServerKRTAP4-3
ExAC (Exome Aggregation Consortium)KRTAP4-3 (select the gene name)
Genetic variants : HAPMAP85290
Genomic Variants (DGV)KRTAP4-3 [DGVbeta]
DECIPHERKRTAP4-3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP4-3 
Mutations
ICGC Data PortalKRTAP4-3 
TCGA Data PortalKRTAP4-3 
Broad Tumor PortalKRTAP4-3
OASIS PortalKRTAP4-3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP4-3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP4-3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP4-3
DgiDB (Drug Gene Interaction Database)KRTAP4-3
DoCM (Curated mutations)KRTAP4-3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP4-3 (select a term)
intoGenKRTAP4-3
Cancer3DKRTAP4-3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP4-3
Genetic Testing Registry KRTAP4-3
NextProtQ9BYR4 [Medical]
TSGene85290
GENETestsKRTAP4-3
Target ValidationKRTAP4-3
Huge Navigator KRTAP4-3 [HugePedia]
snp3D : Map Gene to Disease85290
BioCentury BCIQKRTAP4-3
ClinGenKRTAP4-3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85290
Chemical/Pharm GKB GenePA38756
Clinical trialKRTAP4-3
Miscellaneous
canSAR (ICR)KRTAP4-3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP4-3
EVEXKRTAP4-3
GoPubMedKRTAP4-3
iHOPKRTAP4-3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:22 CEST 2017

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