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KRTAP4-4 (keratin associated protein 4-4)

Identity

Alias_namesKRTAP4-13
keratin associated protein 4-13
Alias_symbol (synonym)KAP4.4
KAP4.13
Other aliasKRTAP4.13
KRTAP4.4
HGNC (Hugo) KRTAP4-4
LocusID (NCBI) 84616
Atlas_Id 65113
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41159654 and ends at 41160731 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP4-4   16928
Cards
Entrez_Gene (NCBI)KRTAP4-4  84616  keratin associated protein 4-4
AliasesKAP4.13; KAP4.4; KRTAP4-13; KRTAP4.13; 
KRTAP4.4
GeneCards (Weizmann)KRTAP4-4
Ensembl hg19 (Hinxton)ENSG00000171396 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171396 [Gene_View]  chr17:41159654-41160731 [Contig_View]  KRTAP4-4 [Vega]
ICGC DataPortalENSG00000171396
TCGA cBioPortalKRTAP4-4
AceView (NCBI)KRTAP4-4
Genatlas (Paris)KRTAP4-4
WikiGenes84616
SOURCE (Princeton)KRTAP4-4
Genetics Home Reference (NIH)KRTAP4-4
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP4-4  -     chr17:41159654-41160731 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP4-4  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP4-4 - 17q21.2 [CytoView hg19]  KRTAP4-4 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP4-4 [Mapview hg19]  KRTAP4-4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ296168 AJ406936 BC156148 BC156986
RefSeq transcript (Entrez)NM_032524
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP4-4
Cluster EST : UnigeneHs.307022 [ NCBI ]
CGAP (NCI)Hs.307022
Alternative Splicing GalleryENSG00000171396
Gene ExpressionKRTAP4-4 [ NCBI-GEO ]   KRTAP4-4 [ EBI - ARRAY_EXPRESS ]   KRTAP4-4 [ SEEK ]   KRTAP4-4 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP4-4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84616
GTEX Portal (Tissue expression)KRTAP4-4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYR3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYR3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYR3
Splice isoforms : SwissVarQ9BYR3
PhosPhoSitePlusQ9BYR3
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP4-4
DMDM Disease mutations84616
Blocks (Seattle)KRTAP4-4
SuperfamilyQ9BYR3
Human Protein AtlasENSG00000171396
Peptide AtlasQ9BYR3
HPRD13945
IPIIPI00000143   IPI00916983   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYR3
IntAct (EBI)Q9BYR3
FunCoupENSG00000171396
BioGRIDKRTAP4-4
STRING (EMBL)KRTAP4-4
ZODIACKRTAP4-4
Ontologies - Pathways
QuickGOQ9BYR3
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP4-4
Atlas of Cancer Signalling NetworkKRTAP4-4
Wikipedia pathwaysKRTAP4-4
Orthology - Evolution
OrthoDB84616
GeneTree (enSembl)ENSG00000171396
Phylogenetic Trees/Animal Genes : TreeFamKRTAP4-4
HOVERGENQ9BYR3
HOGENOMQ9BYR3
Homologs : HomoloGeneKRTAP4-4
Homology/Alignments : Family Browser (UCSC)KRTAP4-4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP4-4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP4-4
dbVarKRTAP4-4
ClinVarKRTAP4-4
1000_GenomesKRTAP4-4 
Exome Variant ServerKRTAP4-4
ExAC (Exome Aggregation Consortium)KRTAP4-4 (select the gene name)
Genetic variants : HAPMAP84616
Genomic Variants (DGV)KRTAP4-4 [DGVbeta]
DECIPHERKRTAP4-4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP4-4 
Mutations
ICGC Data PortalKRTAP4-4 
TCGA Data PortalKRTAP4-4 
Broad Tumor PortalKRTAP4-4
OASIS PortalKRTAP4-4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP4-4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP4-4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP4-4
DgiDB (Drug Gene Interaction Database)KRTAP4-4
DoCM (Curated mutations)KRTAP4-4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP4-4 (select a term)
intoGenKRTAP4-4
Cancer3DKRTAP4-4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP4-4
Genetic Testing Registry KRTAP4-4
NextProtQ9BYR3 [Medical]
TSGene84616
GENETestsKRTAP4-4
Target ValidationKRTAP4-4
Huge Navigator KRTAP4-4 [HugePedia]
snp3D : Map Gene to Disease84616
BioCentury BCIQKRTAP4-4
ClinGenKRTAP4-4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84616
Chemical/Pharm GKB GenePA38426
Clinical trialKRTAP4-4
Miscellaneous
canSAR (ICR)KRTAP4-4 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP4-4
EVEXKRTAP4-4
GoPubMedKRTAP4-4
iHOPKRTAP4-4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:22 CEST 2017

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