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KRTAP4-5 (keratin associated protein 4-5)

Identity

Alias_symbol (synonym)KAP4.5
Other aliasKRTAP4.5
HGNC (Hugo) KRTAP4-5
LocusID (NCBI) 85289
Atlas_Id 65114
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41148924 and ends at 41149802 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP4-5   18899
Cards
Entrez_Gene (NCBI)KRTAP4-5  85289  keratin associated protein 4-5
AliasesKAP4.5; KRTAP4.5
GeneCards (Weizmann)KRTAP4-5
Ensembl hg19 (Hinxton)ENSG00000198271 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198271 [Gene_View]  chr17:41148924-41149802 [Contig_View]  KRTAP4-5 [Vega]
ICGC DataPortalENSG00000198271
TCGA cBioPortalKRTAP4-5
AceView (NCBI)KRTAP4-5
Genatlas (Paris)KRTAP4-5
WikiGenes85289
SOURCE (Princeton)KRTAP4-5
Genetics Home Reference (NIH)KRTAP4-5
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP4-5  -     chr17:41148924-41149802 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP4-5  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP4-5 - 17q21.2 [CytoView hg19]  KRTAP4-5 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP4-5 [Mapview hg19]  KRTAP4-5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406937 BC160148
RefSeq transcript (Entrez)NM_033188
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP4-5
Cluster EST : UnigeneHs.514863 [ NCBI ]
CGAP (NCI)Hs.514863
Alternative Splicing GalleryENSG00000198271
Gene ExpressionKRTAP4-5 [ NCBI-GEO ]   KRTAP4-5 [ EBI - ARRAY_EXPRESS ]   KRTAP4-5 [ SEEK ]   KRTAP4-5 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP4-5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85289
GTEX Portal (Tissue expression)KRTAP4-5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYR2
Splice isoforms : SwissVarQ9BYR2
PhosPhoSitePlusQ9BYR2
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP4-5
DMDM Disease mutations85289
Blocks (Seattle)KRTAP4-5
SuperfamilyQ9BYR2
Human Protein AtlasENSG00000198271
Peptide AtlasQ9BYR2
HPRD13946
IPIIPI00307621   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYR2
IntAct (EBI)Q9BYR2
FunCoupENSG00000198271
BioGRIDKRTAP4-5
STRING (EMBL)KRTAP4-5
ZODIACKRTAP4-5
Ontologies - Pathways
QuickGOQ9BYR2
Ontology : AmiGOcytosol  aging  keratinization  hair cycle  keratin filament  
Ontology : EGO-EBIcytosol  aging  keratinization  hair cycle  keratin filament  
NDEx NetworkKRTAP4-5
Atlas of Cancer Signalling NetworkKRTAP4-5
Wikipedia pathwaysKRTAP4-5
Orthology - Evolution
OrthoDB85289
GeneTree (enSembl)ENSG00000198271
Phylogenetic Trees/Animal Genes : TreeFamKRTAP4-5
HOVERGENQ9BYR2
HOGENOMQ9BYR2
Homologs : HomoloGeneKRTAP4-5
Homology/Alignments : Family Browser (UCSC)KRTAP4-5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP4-5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP4-5
dbVarKRTAP4-5
ClinVarKRTAP4-5
1000_GenomesKRTAP4-5 
Exome Variant ServerKRTAP4-5
ExAC (Exome Aggregation Consortium)KRTAP4-5 (select the gene name)
Genetic variants : HAPMAP85289
Genomic Variants (DGV)KRTAP4-5 [DGVbeta]
DECIPHERKRTAP4-5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP4-5 
Mutations
ICGC Data PortalKRTAP4-5 
TCGA Data PortalKRTAP4-5 
Broad Tumor PortalKRTAP4-5
OASIS PortalKRTAP4-5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP4-5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP4-5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP4-5
DgiDB (Drug Gene Interaction Database)KRTAP4-5
DoCM (Curated mutations)KRTAP4-5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP4-5 (select a term)
intoGenKRTAP4-5
Cancer3DKRTAP4-5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP4-5
Genetic Testing Registry KRTAP4-5
NextProtQ9BYR2 [Medical]
TSGene85289
GENETestsKRTAP4-5
Target ValidationKRTAP4-5
Huge Navigator KRTAP4-5 [HugePedia]
snp3D : Map Gene to Disease85289
BioCentury BCIQKRTAP4-5
ClinGenKRTAP4-5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85289
Chemical/Pharm GKB GenePA38748
Clinical trialKRTAP4-5
Miscellaneous
canSAR (ICR)KRTAP4-5 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP4-5
EVEXKRTAP4-5
GoPubMedKRTAP4-5
iHOPKRTAP4-5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:19 CEST 2017

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