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KRTAP4-7 (keratin associated protein 4-7)

Identity

Alias_symbol (synonym)KAP4.7
Other aliasKRTAP4.7
HGNC (Hugo) KRTAP4-7
LocusID (NCBI) 100132476
Atlas_Id 65116
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41084207 and ends at 41085144 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP4-7   18898
Cards
Entrez_Gene (NCBI)KRTAP4-7  100132476  keratin associated protein 4-7
AliasesKAP4.7; KRTAP4.7
GeneCards (Weizmann)KRTAP4-7
Ensembl hg19 (Hinxton)ENSG00000240871 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240871 [Gene_View]  chr17:41084207-41085144 [Contig_View]  KRTAP4-7 [Vega]
ICGC DataPortalENSG00000240871
TCGA cBioPortalKRTAP4-7
AceView (NCBI)KRTAP4-7
Genatlas (Paris)KRTAP4-7
WikiGenes100132476
SOURCE (Princeton)KRTAP4-7
Genetics Home Reference (NIH)KRTAP4-7
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP4-7  -     chr17:41084207-41085144 +  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP4-7  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP4-7 - 17q21.2 [CytoView hg19]  KRTAP4-7 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP4-7 [Mapview hg19]  KRTAP4-7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_033061
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP4-7
Cluster EST : UnigeneHs.632746 [ NCBI ]
CGAP (NCI)Hs.632746
Alternative Splicing GalleryENSG00000240871
Gene ExpressionKRTAP4-7 [ NCBI-GEO ]   KRTAP4-7 [ EBI - ARRAY_EXPRESS ]   KRTAP4-7 [ SEEK ]   KRTAP4-7 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP4-7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132476
GTEX Portal (Tissue expression)KRTAP4-7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYR0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYR0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYR0
Splice isoforms : SwissVarQ9BYR0
PhosPhoSitePlusQ9BYR0
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP4-7
DMDM Disease mutations100132476
Blocks (Seattle)KRTAP4-7
SuperfamilyQ9BYR0
Human Protein AtlasENSG00000240871
Peptide AtlasQ9BYR0
IPIIPI00260838   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYR0
IntAct (EBI)Q9BYR0
FunCoupENSG00000240871
BioGRIDKRTAP4-7
STRING (EMBL)KRTAP4-7
ZODIACKRTAP4-7
Ontologies - Pathways
QuickGOQ9BYR0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkKRTAP4-7
Atlas of Cancer Signalling NetworkKRTAP4-7
Wikipedia pathwaysKRTAP4-7
Orthology - Evolution
OrthoDB100132476
GeneTree (enSembl)ENSG00000240871
Phylogenetic Trees/Animal Genes : TreeFamKRTAP4-7
HOVERGENQ9BYR0
HOGENOMQ9BYR0
Homologs : HomoloGeneKRTAP4-7
Homology/Alignments : Family Browser (UCSC)KRTAP4-7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP4-7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP4-7
dbVarKRTAP4-7
ClinVarKRTAP4-7
1000_GenomesKRTAP4-7 
Exome Variant ServerKRTAP4-7
ExAC (Exome Aggregation Consortium)KRTAP4-7 (select the gene name)
Genetic variants : HAPMAP100132476
Genomic Variants (DGV)KRTAP4-7 [DGVbeta]
DECIPHERKRTAP4-7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP4-7 
Mutations
ICGC Data PortalKRTAP4-7 
TCGA Data PortalKRTAP4-7 
Broad Tumor PortalKRTAP4-7
OASIS PortalKRTAP4-7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP4-7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP4-7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP4-7
DgiDB (Drug Gene Interaction Database)KRTAP4-7
DoCM (Curated mutations)KRTAP4-7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP4-7 (select a term)
intoGenKRTAP4-7
Cancer3DKRTAP4-7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP4-7
Genetic Testing Registry KRTAP4-7
NextProtQ9BYR0 [Medical]
TSGene100132476
GENETestsKRTAP4-7
Target ValidationKRTAP4-7
Huge Navigator KRTAP4-7 [HugePedia]
snp3D : Map Gene to Disease100132476
BioCentury BCIQKRTAP4-7
ClinGenKRTAP4-7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132476
Chemical/Pharm GKB GenePA38747
Clinical trialKRTAP4-7
Miscellaneous
canSAR (ICR)KRTAP4-7 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP4-7
EVEXKRTAP4-7
GoPubMedKRTAP4-7
iHOPKRTAP4-7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:22 CEST 2017

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