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KRTAP4-8 (keratin associated protein 4-8)

Identity

Alias_symbol (synonym)KAP4.8
Other aliasKRTAP4.8
HGNC (Hugo) KRTAP4-8
LocusID (NCBI) 728224
Atlas_Id 65117
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 39253234 and ends at 39254375 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP4-8   17230
Cards
Entrez_Gene (NCBI)KRTAP4-8  728224  keratin associated protein 4-8
AliasesKAP4.8; KRTAP4.8
GeneCards (Weizmann)KRTAP4-8
Ensembl hg19 (Hinxton)ENSG00000204880 [Gene_View]  chr17:39253234-39254375 [Contig_View]  KRTAP4-8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204880 [Gene_View]  chr17:39253234-39254375 [Contig_View]  KRTAP4-8 [Vega]
ICGC DataPortalENSG00000204880
TCGA cBioPortalKRTAP4-8
AceView (NCBI)KRTAP4-8
Genatlas (Paris)KRTAP4-8
WikiGenes728224
SOURCE (Princeton)KRTAP4-8
Genetics Home Reference (NIH)KRTAP4-8
Genomic and cartography
GoldenPath hg19 (UCSC)KRTAP4-8  -     chr17:39253234-39254375 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRTAP4-8  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblKRTAP4-8 - 17q21.2 [CytoView hg19]  KRTAP4-8 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP4-8 [Mapview hg19]  KRTAP4-8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406940
RefSeq transcript (Entrez)NM_031960
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_003871091 NW_004929407
Consensus coding sequences : CCDS (NCBI)KRTAP4-8
Cluster EST : UnigeneHs.307019 [ NCBI ]
CGAP (NCI)Hs.307019
Alternative Splicing GalleryENSG00000204880
Gene ExpressionKRTAP4-8 [ NCBI-GEO ]   KRTAP4-8 [ EBI - ARRAY_EXPRESS ]   KRTAP4-8 [ SEEK ]   KRTAP4-8 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP4-8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728224
GTEX Portal (Tissue expression)KRTAP4-8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYQ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYQ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYQ9
Splice isoforms : SwissVarQ9BYQ9
PhosPhoSitePlusQ9BYQ9
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP4-8
DMDM Disease mutations728224
Blocks (Seattle)KRTAP4-8
SuperfamilyQ9BYQ9
Human Protein AtlasENSG00000204880
Peptide AtlasQ9BYQ9
IPIIPI00737452   IPI00939769   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYQ9
IntAct (EBI)Q9BYQ9
FunCoupENSG00000204880
BioGRIDKRTAP4-8
STRING (EMBL)KRTAP4-8
ZODIACKRTAP4-8
Ontologies - Pathways
QuickGOQ9BYQ9
Ontology : AmiGOaging  hair cycle  keratin filament  
Ontology : EGO-EBIaging  hair cycle  keratin filament  
NDEx NetworkKRTAP4-8
Atlas of Cancer Signalling NetworkKRTAP4-8
Wikipedia pathwaysKRTAP4-8
Orthology - Evolution
OrthoDB728224
GeneTree (enSembl)ENSG00000204880
Phylogenetic Trees/Animal Genes : TreeFamKRTAP4-8
HOVERGENQ9BYQ9
HOGENOMQ9BYQ9
Homologs : HomoloGeneKRTAP4-8
Homology/Alignments : Family Browser (UCSC)KRTAP4-8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP4-8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP4-8
dbVarKRTAP4-8
ClinVarKRTAP4-8
1000_GenomesKRTAP4-8 
Exome Variant ServerKRTAP4-8
ExAC (Exome Aggregation Consortium)KRTAP4-8 (select the gene name)
Genetic variants : HAPMAP728224
Genomic Variants (DGV)KRTAP4-8 [DGVbeta]
DECIPHER (Syndromes)17:39253234-39254375  ENSG00000204880
CONAN: Copy Number AnalysisKRTAP4-8 
Mutations
ICGC Data PortalKRTAP4-8 
TCGA Data PortalKRTAP4-8 
Broad Tumor PortalKRTAP4-8
OASIS PortalKRTAP4-8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP4-8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP4-8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP4-8
DgiDB (Drug Gene Interaction Database)KRTAP4-8
DoCM (Curated mutations)KRTAP4-8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP4-8 (select a term)
intoGenKRTAP4-8
Cancer3DKRTAP4-8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP4-8
Genetic Testing Registry KRTAP4-8
NextProtQ9BYQ9 [Medical]
TSGene728224
GENETestsKRTAP4-8
Huge Navigator KRTAP4-8 [HugePedia]
snp3D : Map Gene to Disease728224
BioCentury BCIQKRTAP4-8
ClinGenKRTAP4-8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728224
Chemical/Pharm GKB GenePA38442
Clinical trialKRTAP4-8
Miscellaneous
canSAR (ICR)KRTAP4-8 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP4-8
EVEXKRTAP4-8
GoPubMedKRTAP4-8
iHOPKRTAP4-8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:10:33 CET 2017

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