Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP4-9 (keratin associated protein 4-9)

Identity

Alias_symbol (synonym)KAP4.9
Other alias
HGNC (Hugo) KRTAP4-9
LocusID (NCBI) 100132386
Atlas_Id 65118
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41105389 and ends at 41106488 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

=TR>¼TD$WIDTH=15%>Human Protein Atlas
Nomenclature
HGNC (Hugo)KRTAP4-9   18910
Cards
Entrez_Gene (NCBI)KRTAP4-9  100132386  keratin associated protein 4-9
AliasesKAP4.9
GeneCards (Weizmann)KRTAP4-9
Ensembl hg19 (Hinxton)ENSG00000212722 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212722 [Gene_View]  chr17:41105389-41106488 [Contig_View]  KRTAP4-9 [Vega]
ICGC DataPortalENSG00000212722
TCGA cBioPortalKRTAP4-9
AceView (NCBI)KRTAP4-9
Genatlas (Paris)KRTAP4-9
WikiGenes100132386
SOURCE (Princeton)KRTAP4-9
Genetics Home Reference (NIH)KRTAP4-9
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP4-9  -     chr17:41105389-41106488 +  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP4-9  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP4-9 - 17q21.2 [CytoView hg19]  KRTAP4-9 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP4-9 [Mapview hg19]  KRTAP4-9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406941
RefSeq transcript (Entrez)NM_001146041
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP4-9
Cluster EST : UnigeneHs.307018 [ NCBI ]
CGAP (NCI)Hs.307018
Alternative Splicing GalleryENSG00000212722
Gene ExpressionKRTAP4-9 [ NCBI-GEO ]   KRTAP4-9 [ EBI - ARRAY_EXPRESS ]   KRTAP4-9 [ SEEK ]   KRTAP4-9 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP4-9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132386
GTEX Portal (Tissue expression)KRTAP4-9
ENSG00000212722-KRTAP4-9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYQ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYQ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYQ8
Splice isoforms : SwissVarQ9BYQ8
PhosPhoSitePlusQ9BYQ8
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2 (PF01500)   
Domain families : Pfam (NCBI)pfam01500   
Conserved Domain (NCBI)KRTAP4-9
DMDM Disease mutations100132386
Blocks (Seattle)KRTAP4-9
SuperfamilyQ9BYQ8
Human Protein Atlas [tissue]ENSG00000212722-KRTAP4-9 [tissue]
Peptide AtlasQ9BYQ8
IPIIPI00105153   IPI01015895   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYQ8
IntAct (EBI)Q9BYQ8
FunCoupENSG00000212722
BioGRIDKRTAP4-9
STRING (EMBL)KRTAP4-9
ZODIACKRTAP4-9
Ontologies - Pathways
QuickGOQ9BYQ8
Ontology : AmiGOcytosol  aging  keratinization  hair cycle  keratin filament  
Ontology : EGO-EBIcytosol  aging  keratinization  hair cycle  keratin filament  
NDEx NetworkKRTAP4-9
Atlas of Cancer Signalling NetworkKRTAP4-9
Wikipedia pathwaysKRTAP4-9
Orthology - Evolution
OrthoDB100132386
GeneTree (enSembl)ENSG00000212722
Phylogenetic Trees/Animal Genes : TreeFamKRTAP4-9
HOVERGENQ9BYQ8
HOGENOMQ9BYQ8
Homologs : HomoloGeneKRTAP4-9
Homology/Alignments : Family Browser (UCSC)KRTAP4-9
Gene fusions - Rearrangements
Fusion: Tumor Portal KRTAP4-9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP4-9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP4-9
dbVarKRTAP4-9
ClinVarKRTAP4-9
1000_GenomesKRTAP4-9 
Exome Variant ServerKRTAP4-9
ExAC (Exome Aggregation Consortium)ENSG00000212722
GNOMAD BrowserENSG00000212722
Genetic variants : HAPMAP100132386
Genomic Variants (DGV)KRTAP4-9 [DGVbeta]
DECIPHERKRTAP4-9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP4-9 
Mutations
ICGC Data PortalKRTAP4-9 
TCGA Data PortalKRTAP4-9 
Broad Tumor PortalKRTAP4-9
OASIS PortalKRTAP4-9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP4-9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP4-9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP4-9
DgiDB (Drug Gene Interaction Database)KRTAP4-9
DoCM (Curated mutations)KRTAP4-9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP4-9 (select a term)
intoGenKRTAP4-9
Cancer3DKRTAP4-9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP4-9
Genetic Testing Registry KRTAP4-9
NextProtQ9BYQ8 [Medical]
TSGene100132386
GENETestsKRTAP4-9
Target ValidationKRTAP4-9
Huge Navigator KRTAP4-9 [HugePedia]
snp3D : Map Gene to Disease100132386
BioCentury BCIQKRTAP4-9
ClinGenKRTAP4-9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132386
Chemical/Pharm GKB GenePA38758
Clinical trialKRTAP4-9
Miscellaneous
canSAR (ICR)KRTAP4-9 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP4-9
EVEXKRTAP4-9
GoPubMedKRTAP4-9
iHOPKRTAP4-9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:53:11 CET 2017

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