Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KRTAP5-1 (keratin associated protein 5-1)

Identity

Alias_namesKRN1L
keratin, cuticle, ultrahigh sulphur 1-like
Alias_symbol (synonym)KRTAP5.1
Other alias
HGNC (Hugo) KRTAP5-1
LocusID (NCBI) 387264
Atlas_Id 65119
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 1584342 and ends at 1585283 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP5-1   23596
Cards
Entrez_Gene (NCBI)KRTAP5-1  387264  keratin associated protein 5-1
AliasesKRN1L; KRTAP5.1
GeneCards (Weizmann)KRTAP5-1
Ensembl hg19 (Hinxton)ENSG00000205869 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205869 [Gene_View]  chr11:1584342-1585283 [Contig_View]  KRTAP5-1 [Vega]
ICGC DataPortalENSG00000205869
TCGA cBioPortalKRTAP5-1
AceView (NCBI)KRTAP5-1
Genatlas (Paris)KRTAP5-1
WikiGenes387264
SOURCE (Princeton)KRTAP5-1
Genetics Home Reference (NIH)KRTAP5-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP5-1  -     chr11:1584342-1585283 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP5-1  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblKRTAP5-1 - 11p15.5 [CytoView hg19]  KRTAP5-1 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIKRTAP5-1 [Mapview hg19]  KRTAP5-1 [Mapview hg38]
OMIM148022   
Gene and transcription
Genbank (Entrez)AB126070 BC148862
RefSeq transcript (Entrez)NM_001005922
RefSeq genomic (Entrez)NC_000011 NT_187584 NT_187657
Consensus coding sequences : CCDS (NCBI)KRTAP5-1
Cluster EST : UnigeneHs.632147 [ NCBI ]
CGAP (NCI)Hs.632147
Alternative Splicing GalleryENSG00000205869
Gene ExpressionKRTAP5-1 [ NCBI-GEO ]   KRTAP5-1 [ EBI - ARRAY_EXPRESS ]   KRTAP5-1 [ SEEK ]   KRTAP5-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP5-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387264
GTEX Portal (Tissue expression)KRTAP5-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6L8H4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6L8H4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6L8H4
Splice isoforms : SwissVarQ6L8H4
PhosPhoSitePlusQ6L8H4
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRTAP5-1
DMDM Disease mutations387264
Blocks (Seattle)KRTAP5-1
SuperfamilyQ6L8H4
Human Protein AtlasENSG00000205869
Peptide AtlasQ6L8H4
HPRD13948
IPIIPI00418171   
Protein Interaction databases
DIP (DOE-UCLA)Q6L8H4
IntAct (EBI)Q6L8H4
FunCoupENSG00000205869
BioGRIDKRTAP5-1
STRING (EMBL)KRTAP5-1
ZODIACKRTAP5-1
Ontologies - Pathways
QuickGOQ6L8H4
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP5-1
Atlas of Cancer Signalling NetworkKRTAP5-1
Wikipedia pathwaysKRTAP5-1
Orthology - Evolution
OrthoDB387264
GeneTree (enSembl)ENSG00000205869
Phylogenetic Trees/Animal Genes : TreeFamKRTAP5-1
HOVERGENQ6L8H4
HOGENOMQ6L8H4
Homologs : HomoloGeneKRTAP5-1
Homology/Alignments : Family Browser (UCSC)KRTAP5-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP5-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP5-1
dbVarKRTAP5-1
ClinVarKRTAP5-1
1000_GenomesKRTAP5-1 
Exome Variant ServerKRTAP5-1
ExAC (Exome Aggregation Consortium)KRTAP5-1 (select the gene name)
Genetic variants : HAPMAP387264
Genomic Variants (DGV)KRTAP5-1 [DGVbeta]
DECIPHERKRTAP5-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP5-1 
Mutations
ICGC Data PortalKRTAP5-1 
TCGA Data PortalKRTAP5-1 
Broad Tumor PortalKRTAP5-1
OASIS PortalKRTAP5-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP5-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP5-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP5-1
DgiDB (Drug Gene Interaction Database)KRTAP5-1
DoCM (Curated mutations)KRTAP5-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP5-1 (select a term)
intoGenKRTAP5-1
Cancer3DKRTAP5-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM148022   
Orphanet
MedgenKRTAP5-1
Genetic Testing Registry KRTAP5-1
NextProtQ6L8H4 [Medical]
TSGene387264
GENETestsKRTAP5-1
Target ValidationKRTAP5-1
Huge Navigator KRTAP5-1 [HugePedia]
snp3D : Map Gene to Disease387264
BioCentury BCIQKRTAP5-1
ClinGenKRTAP5-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387264
Chemical/Pharm GKB GenePA134874098
Clinical trialKRTAP5-1
Miscellaneous
canSAR (ICR)KRTAP5-1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP5-1
EVEXKRTAP5-1
GoPubMedKRTAP5-1
iHOPKRTAP5-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:55:20 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.