Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP5-10 (keratin associated protein 5-10)

Identity

Alias_symbol (synonym)KRTAP5.10
Other alias
HGNC (Hugo) KRTAP5-10
LocusID (NCBI) 387273
Atlas_Id 65120
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 71565563 and ends at 71566620 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP5-10   23605
Cards
Entrez_Gene (NCBI)KRTAP5-10  387273  keratin associated protein 5-10
AliasesKRTAP5.10
GeneCards (Weizmann)KRTAP5-10
Ensembl hg19 (Hinxton)ENSG00000204572 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204572 [Gene_View]  chr11:71565563-71566620 [Contig_View]  KRTAP5-10 [Vega]
ICGC DataPortalENSG00000204572
TCGA cBioPortalKRTAP5-10
AceView (NCBI)KRTAP5-10
Genatlas (Paris)KRTAP5-10
WikiGenes387273
SOURCE (Princeton)KRTAP5-10
Genetics Home Reference (NIH)KRTAP5-10
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP5-10  -     chr11:71565563-71566620 +  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP5-10  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblKRTAP5-10 - 11q13.4 [CytoView hg19]  KRTAP5-10 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBIKRTAP5-10 [Mapview hg19]  KRTAP5-10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB126079 BC137550 BC137566
RefSeq transcript (Entrez)NM_001012710
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP5-10
Cluster EST : UnigeneHs.661887 [ NCBI ]
CGAP (NCI)Hs.661887
Alternative Splicing GalleryENSG00000204572
Gene ExpressionKRTAP5-10 [ NCBI-GEO ]   KRTAP5-10 [ EBI - ARRAY_EXPRESS ]   KRTAP5-10 [ SEEK ]   KRTAP5-10 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP5-10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387273
GTEX Portal (Tissue expression)KRTAP5-10
Human Protein AtlasENSG00000204572-KRTAP5-10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6L8G5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6L8G5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6L8G5
Splice isoforms : SwissVarQ6L8G5
PhosPhoSitePlusQ6L8G5
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP5-10
DMDM Disease mutations387273
Blocks (Seattle)KRTAP5-10
SuperfamilyQ6L8G5
Human Protein Atlas [tissue]ENSG00000204572-KRTAP5-10 [tissue]
Peptide AtlasQ6L8G5
HPRD12394
IPIIPI00437998   IPI00940150   
Protein Interaction databases
DIP (DOE-UCLA)Q6L8G5
IntAct (EBI)Q6L8G5
FunCoupENSG00000204572
BioGRIDKRTAP5-10
STRING (EMBL)KRTAP5-10
ZODIACKRTAP5-10
Ontologies - Pathways
QuickGOQ6L8G5
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP5-10
Atlas of Cancer Signalling NetworkKRTAP5-10
Wikipedia pathwaysKRTAP5-10
Orthology - Evolution
OrthoDB387273
GeneTree (enSembl)ENSG00000204572
Phylogenetic Trees/Animal Genes : TreeFamKRTAP5-10
HOVERGENQ6L8G5
HOGENOMQ6L8G5
Homologs : HomoloGeneKRTAP5-10
Homology/Alignments : Family Browser (UCSC)KRTAP5-10
Gene fusions - Rearrangements
Fusion: Tumor Portal KRTAP5-10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP5-10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP5-10
dbVarKRTAP5-10
ClinVarKRTAP5-10
1000_GenomesKRTAP5-10 
Exome Variant ServerKRTAP5-10
ExAC (Exome Aggregation Consortium)ENSG00000204572
GNOMAD BrowserENSG00000204572
Genetic variants : HAPMAP387273
Genomic Variants (DGV)KRTAP5-10 [DGVbeta]
DECIPHERKRTAP5-10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP5-10 
Mutations
ICGC Data PortalKRTAP5-10 
TCGA Data PortalKRTAP5-10 
Broad Tumor PortalKRTAP5-10
OASIS PortalKRTAP5-10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP5-10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP5-10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP5-10
DgiDB (Drug Gene Interaction Database)KRTAP5-10
DoCM (Curated mutations)KRTAP5-10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP5-10 (select a term)
intoGenKRTAP5-10
Cancer3DKRTAP5-10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP5-10
Genetic Testing Registry KRTAP5-10
NextProtQ6L8G5 [Medical]
TSGene387273
GENETestsKRTAP5-10
Target ValidationKRTAP5-10
Huge Navigator KRTAP5-10 [HugePedia]
snp3D : Map Gene to Disease387273
BioCentury BCIQKRTAP5-10
ClinGenKRTAP5-10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387273
Chemical/Pharm GKB GenePA134898624
Clinical trialKRTAP5-10
Miscellaneous
canSAR (ICR)KRTAP5-10 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP5-10
EVEXKRTAP5-10
GoPubMedKRTAP5-10
iHOPKRTAP5-10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:53:11 CET 2017

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