Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP5-11 (keratin associated protein 5-11)

Identity

Alias_symbol (synonym)KRTAP5.11
KRTAP5-6
Other aliasKRTAP5-5
HGNC (Hugo) KRTAP5-11
LocusID (NCBI) 440051
Atlas_Id 65121
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 71581855 and ends at 71582875 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP5-11   23606
Cards
Entrez_Gene (NCBI)KRTAP5-11  440051  keratin associated protein 5-11
AliasesKRTAP5-5; KRTAP5-6; KRTAP5.11
GeneCards (Weizmann)KRTAP5-11
Ensembl hg19 (Hinxton)ENSG00000204571 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204571 [Gene_View]  chr11:71581855-71582875 [Contig_View]  KRTAP5-11 [Vega]
ICGC DataPortalENSG00000204571
TCGA cBioPortalKRTAP5-11
AceView (NCBI)KRTAP5-11
Genatlas (Paris)KRTAP5-11
WikiGenes440051
SOURCE (Princeton)KRTAP5-11
Genetics Home Reference (NIH)KRTAP5-11
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP5-11  -     chr11:71581855-71582875 -  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP5-11  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblKRTAP5-11 - 11q13.4 [CytoView hg19]  KRTAP5-11 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBIKRTAP5-11 [Mapview hg19]  KRTAP5-11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB126080 AJ628244 BC130498 BC130502 BC148463
RefSeq transcript (Entrez)NM_001005405
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP5-11
Cluster EST : UnigeneHs.679617 [ NCBI ]
CGAP (NCI)Hs.679617
Alternative Splicing GalleryENSG00000204571
Gene ExpressionKRTAP5-11 [ NCBI-GEO ]   KRTAP5-11 [ EBI - ARRAY_EXPRESS ]   KRTAP5-11 [ SEEK ]   KRTAP5-11 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP5-11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440051
GTEX Portal (Tissue expression)KRTAP5-11
Human Protein AtlasENSG00000204571-KRTAP5-11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6L8G4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6L8G4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6L8G4
Splice isoforms : SwissVarQ6L8G4
PhosPhoSitePlusQ6L8G4
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP5-11
DMDM Disease mutations440051
Blocks (Seattle)KRTAP5-11
SuperfamilyQ6L8G4
Human Protein Atlas [tissue]ENSG00000204571-KRTAP5-11 [tissue]
Peptide AtlasQ6L8G4
HPRD17248
IPIIPI00938254   IPI00437997   
Protein Interaction databases
DIP (DOE-UCLA)Q6L8G4
IntAct (EBI)Q6L8G4
FunCoupENSG00000204571
BioGRIDKRTAP5-11
STRING (EMBL)KRTAP5-11
ZODIACKRTAP5-11
Ontologies - Pathways
QuickGOQ6L8G4
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP5-11
Atlas of Cancer Signalling NetworkKRTAP5-11
Wikipedia pathwaysKRTAP5-11
Orthology - Evolution
OrthoDB440051
GeneTree (enSembl)ENSG00000204571
Phylogenetic Trees/Animal Genes : TreeFamKRTAP5-11
HOVERGENQ6L8G4
HOGENOMQ6L8G4
Homologs : HomoloGeneKRTAP5-11
Homology/Alignments : Family Browser (UCSC)KRTAP5-11
Gene fusions - Rearrangements
Fusion: Tumor Portal KRTAP5-11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP5-11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP5-11
dbVarKRTAP5-11
ClinVarKRTAP5-11
1000_GenomesKRTAP5-11 
Exome Variant ServerKRTAP5-11
ExAC (Exome Aggregation Consortium)ENSG00000204571
GNOMAD BrowserENSG00000204571
Genetic variants : HAPMAP440051
Genomic Variants (DGV)KRTAP5-11 [DGVbeta]
DECIPHERKRTAP5-11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP5-11 
Mutations
ICGC Data PortalKRTAP5-11 
TCGA Data PortalKRTAP5-11 
Broad Tumor PortalKRTAP5-11
OASIS PortalKRTAP5-11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP5-11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP5-11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP5-11
DgiDB (Drug Gene Interaction Database)KRTAP5-11
DoCM (Curated mutations)KRTAP5-11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP5-11 (select a term)
intoGenKRTAP5-11
Cancer3DKRTAP5-11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP5-11
Genetic Testing Registry KRTAP5-11
NextProtQ6L8G4 [Medical]
TSGene440051
GENETestsKRTAP5-11
Target ValidationKRTAP5-11
Huge Navigator KRTAP5-11 [HugePedia]
snp3D : Map Gene to Disease440051
BioCentury BCIQKRTAP5-11
ClinGenKRTAP5-11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440051
Chemical/Pharm GKB GenePA134989436
Clinical trialKRTAP5-11
Miscellaneous
canSAR (ICR)KRTAP5-11 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP5-11
EVEXKRTAP5-11
GoPubMedKRTAP5-11
iHOPKRTAP5-11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:53:12 CET 2017

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