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KRTAP5-3 (keratin associated protein 5-3)

Identity

Alias_symbol (synonym)KRTAP5.3
KRTAP5-9
Other alias
HGNC (Hugo) KRTAP5-3
LocusID (NCBI) 387266
Atlas_Id 65123
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 1607565 and ends at 1608463 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP5-3   23598
Cards
Entrez_Gene (NCBI)KRTAP5-3  387266  keratin associated protein 5-3
AliasesKRTAP5-9; KRTAP5.3
GeneCards (Weizmann)KRTAP5-3
Ensembl hg19 (Hinxton)ENSG00000196224 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196224 [Gene_View]  chr11:1607565-1608463 [Contig_View]  KRTAP5-3 [Vega]
ICGC DataPortalENSG00000196224
TCGA cBioPortalKRTAP5-3
AceView (NCBI)KRTAP5-3
Genatlas (Paris)KRTAP5-3
WikiGenes387266
SOURCE (Princeton)KRTAP5-3
Genetics Home Reference (NIH)KRTAP5-3
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP5-3  -     chr11:1607565-1608463 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP5-3  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblKRTAP5-3 - 11p15.5 [CytoView hg19]  KRTAP5-3 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIKRTAP5-3 [Mapview hg19]  KRTAP5-3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB126072 AJ628246 AY597812 BC148332 BC148733
RefSeq transcript (Entrez)NM_001012708
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_187584 NT_187657
Consensus coding sequences : CCDS (NCBI)KRTAP5-3
Cluster EST : UnigeneHs.532471 [ NCBI ]
CGAP (NCI)Hs.532471
Alternative Splicing GalleryENSG00000196224
Gene ExpressionKRTAP5-3 [ NCBI-GEO ]   KRTAP5-3 [ EBI - ARRAY_EXPRESS ]   KRTAP5-3 [ SEEK ]   KRTAP5-3 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP5-3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387266
GTEX Portal (Tissue expression)KRTAP5-3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6L8H2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6L8H2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6L8H2
Splice isoforms : SwissVarQ6L8H2
PhosPhoSitePlusQ6L8H2
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRTAP5-3
DMDM Disease mutations387266
Blocks (Seattle)KRTAP5-3
SuperfamilyQ6L8H2
Human Protein AtlasENSG00000196224
Peptide AtlasQ6L8H2
HPRD12395
IPIIPI00438002   
Protein Interaction databases
DIP (DOE-UCLA)Q6L8H2
IntAct (EBI)Q6L8H2
FunCoupENSG00000196224
BioGRIDKRTAP5-3
STRING (EMBL)KRTAP5-3
ZODIACKRTAP5-3
Ontologies - Pathways
QuickGOQ6L8H2
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP5-3
Atlas of Cancer Signalling NetworkKRTAP5-3
Wikipedia pathwaysKRTAP5-3
Orthology - Evolution
OrthoDB387266
GeneTree (enSembl)ENSG00000196224
Phylogenetic Trees/Animal Genes : TreeFamKRTAP5-3
HOVERGENQ6L8H2
HOGENOMQ6L8H2
Homologs : HomoloGeneKRTAP5-3
Homology/Alignments : Family Browser (UCSC)KRTAP5-3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP5-3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP5-3
dbVarKRTAP5-3
ClinVarKRTAP5-3
1000_GenomesKRTAP5-3 
Exome Variant ServerKRTAP5-3
ExAC (Exome Aggregation Consortium)KRTAP5-3 (select the gene name)
Genetic variants : HAPMAP387266
Genomic Variants (DGV)KRTAP5-3 [DGVbeta]
DECIPHERKRTAP5-3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP5-3 
Mutations
ICGC Data PortalKRTAP5-3 
TCGA Data PortalKRTAP5-3 
Broad Tumor PortalKRTAP5-3
OASIS PortalKRTAP5-3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP5-3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP5-3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP5-3
DgiDB (Drug Gene Interaction Database)KRTAP5-3
DoCM (Curated mutations)KRTAP5-3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP5-3 (select a term)
intoGenKRTAP5-3
Cancer3DKRTAP5-3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP5-3
Genetic Testing Registry KRTAP5-3
NextProtQ6L8H2 [Medical]
TSGene387266
GENETestsKRTAP5-3
Target ValidationKRTAP5-3
Huge Navigator KRTAP5-3 [HugePedia]
snp3D : Map Gene to Disease387266
BioCentury BCIQKRTAP5-3
ClinGenKRTAP5-3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387266
Chemical/Pharm GKB GenePA134865306
Clinical trialKRTAP5-3
Miscellaneous
canSAR (ICR)KRTAP5-3 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP5-3
EVEXKRTAP5-3
GoPubMedKRTAP5-3
iHOPKRTAP5-3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:23 CEST 2017

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