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KRTAP5-4 (keratin associated protein 5-4)

Identity

Alias_symbol (synonym)KRTAP5.4
Other alias
HGNC (Hugo) KRTAP5-4
LocusID (NCBI) 387267
Atlas_Id 65124
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 1620958 and ends at 1622138 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP5-4   23599
Cards
Entrez_Gene (NCBI)KRTAP5-4  387267  keratin associated protein 5-4
AliasesKRTAP5.4
GeneCards (Weizmann)KRTAP5-4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:1620958-1622138 [Contig_View]  KRTAP5-4 [Vega]
TCGA cBioPortalKRTAP5-4
AceView (NCBI)KRTAP5-4
Genatlas (Paris)KRTAP5-4
WikiGenes387267
SOURCE (Princeton)KRTAP5-4
Genetics Home Reference (NIH)KRTAP5-4
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP5-4  -     chr11:1620958-1622138 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP5-4  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblKRTAP5-4 - 11p15.5 [CytoView hg19]  KRTAP5-4 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIKRTAP5-4 [Mapview hg19]  KRTAP5-4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB126073 BC146561 BC148329
RefSeq transcript (Entrez)NM_001012709 NM_001347674
RefSeq genomic (Entrez)NC_018922 NT_187657
Consensus coding sequences : CCDS (NCBI)KRTAP5-4
Cluster EST : UnigeneHs.539087 [ NCBI ]
CGAP (NCI)Hs.539087
Gene ExpressionKRTAP5-4 [ NCBI-GEO ]   KRTAP5-4 [ EBI - ARRAY_EXPRESS ]   KRTAP5-4 [ SEEK ]   KRTAP5-4 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP5-4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387267
GTEX Portal (Tissue expression)KRTAP5-4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6L8H1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6L8H1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6L8H1
Splice isoforms : SwissVarQ6L8H1
PhosPhoSitePlusQ6L8H1
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP5-4
DMDM Disease mutations387267
Blocks (Seattle)KRTAP5-4
SuperfamilyQ6L8H1
Peptide AtlasQ6L8H1
HPRD12396
IPIIPI00438001   
Protein Interaction databases
DIP (DOE-UCLA)Q6L8H1
IntAct (EBI)Q6L8H1
BioGRIDKRTAP5-4
STRING (EMBL)KRTAP5-4
ZODIACKRTAP5-4
Ontologies - Pathways
QuickGOQ6L8H1
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP5-4
Atlas of Cancer Signalling NetworkKRTAP5-4
Wikipedia pathwaysKRTAP5-4
Orthology - Evolution
OrthoDB387267
Phylogenetic Trees/Animal Genes : TreeFamKRTAP5-4
HOVERGENQ6L8H1
HOGENOMQ6L8H1
Homologs : HomoloGeneKRTAP5-4
Homology/Alignments : Family Browser (UCSC)KRTAP5-4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP5-4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP5-4
dbVarKRTAP5-4
ClinVarKRTAP5-4
1000_GenomesKRTAP5-4 
Exome Variant ServerKRTAP5-4
ExAC (Exome Aggregation Consortium)KRTAP5-4 (select the gene name)
Genetic variants : HAPMAP387267
Genomic Variants (DGV)KRTAP5-4 [DGVbeta]
DECIPHERKRTAP5-4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP5-4 
Mutations
ICGC Data PortalKRTAP5-4 
TCGA Data PortalKRTAP5-4 
Broad Tumor PortalKRTAP5-4
OASIS PortalKRTAP5-4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP5-4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP5-4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP5-4
DgiDB (Drug Gene Interaction Database)KRTAP5-4
DoCM (Curated mutations)KRTAP5-4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP5-4 (select a term)
intoGenKRTAP5-4
Cancer3DKRTAP5-4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP5-4
Genetic Testing Registry KRTAP5-4
NextProtQ6L8H1 [Medical]
TSGene387267
GENETestsKRTAP5-4
Target ValidationKRTAP5-4
Huge Navigator KRTAP5-4 [HugePedia]
snp3D : Map Gene to Disease387267
BioCentury BCIQKRTAP5-4
ClinGenKRTAP5-4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387267
Chemical/Pharm GKB GenePA134916197
Clinical trialKRTAP5-4
Miscellaneous
canSAR (ICR)KRTAP5-4 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP5-4
EVEXKRTAP5-4
GoPubMedKRTAP5-4
iHOPKRTAP5-4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:23 CEST 2017

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