Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KRTAP5-5 (keratin associated protein 5-5)

Identity

Alias_symbol (synonym)KRTAP5.5
KRTAP5-11
Other alias
HGNC (Hugo) KRTAP5-5
LocusID (NCBI) 439915
Atlas_Id 65125
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 1629803 and ends at 1630929 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KRTAP5-5   23601
Cards
Entrez_Gene (NCBI)KRTAP5-5  439915  keratin associated protein 5-5
AliasesKRTAP5-11; KRTAP5.5
GeneCards (Weizmann)KRTAP5-5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:1629803-1630929 [Contig_View]  KRTAP5-5 [Vega]
TCGA cBioPortalKRTAP5-5
AceView (NCBI)KRTAP5-5
Genatlas (Paris)KRTAP5-5
WikiGenes439915
SOURCE (Princeton)KRTAP5-5
Genetics Home Reference (NIH)KRTAP5-5
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP5-5  -     chr11:1629803-1630929 +  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP5-5  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblKRTAP5-5 - 11p15.5 [CytoView hg19]  KRTAP5-5 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIKRTAP5-5 [Mapview hg19]  KRTAP5-5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB126074 AJ628247
RefSeq transcript (Entrez)NM_001001480
RefSeq genomic (Entrez)NC_000011 NT_187584 NT_187657
Consensus coding sequences : CCDS (NCBI)KRTAP5-5
Cluster EST : UnigeneHs.673618 [ NCBI ]
CGAP (NCI)Hs.673618
Gene ExpressionKRTAP5-5 [ NCBI-GEO ]   KRTAP5-5 [ EBI - ARRAY_EXPRESS ]   KRTAP5-5 [ SEEK ]   KRTAP5-5 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP5-5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)439915
GTEX Portal (Tissue expression)KRTAP5-5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ701N2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ701N2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ701N2
Splice isoforms : SwissVarQ701N2
PhosPhoSitePlusQ701N2
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP5-5
DMDM Disease mutations439915
Blocks (Seattle)KRTAP5-5
SuperfamilyQ701N2
Peptide AtlasQ701N2
IPIIPI00478432   IPI01011422   
Protein Interaction databases
DIP (DOE-UCLA)Q701N2
IntAct (EBI)Q701N2
BioGRIDKRTAP5-5
STRING (EMBL)KRTAP5-5
ZODIACKRTAP5-5
Ontologies - Pathways
QuickGOQ701N2
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP5-5
Atlas of Cancer Signalling NetworkKRTAP5-5
Wikipedia pathwaysKRTAP5-5
Orthology - Evolution
OrthoDB439915
Phylogenetic Trees/Animal Genes : TreeFamKRTAP5-5
HOVERGENQ701N2
HOGENOMQ701N2
Homologs : HomoloGeneKRTAP5-5
Homology/Alignments : Family Browser (UCSC)KRTAP5-5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP5-5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP5-5
dbVarKRTAP5-5
ClinVarKRTAP5-5
1000_GenomesKRTAP5-5 
Exome Variant ServerKRTAP5-5
ExAC (Exome Aggregation Consortium)KRTAP5-5 (select the gene name)
Genetic variants : HAPMAP439915
Genomic Variants (DGV)KRTAP5-5 [DGVbeta]
DECIPHERKRTAP5-5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP5-5 
Mutations
ICGC Data PortalKRTAP5-5 
TCGA Data PortalKRTAP5-5 
Broad Tumor PortalKRTAP5-5
OASIS PortalKRTAP5-5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP5-5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP5-5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP5-5
DgiDB (Drug Gene Interaction Database)KRTAP5-5
DoCM (Curated mutations)KRTAP5-5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP5-5 (select a term)
intoGenKRTAP5-5
Cancer3DKRTAP5-5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP5-5
Genetic Testing Registry KRTAP5-5
NextProtQ701N2 [Medical]
TSGene439915
GENETestsKRTAP5-5
Target ValidationKRTAP5-5
Huge Navigator KRTAP5-5 [HugePedia]
snp3D : Map Gene to Disease439915
BioCentury BCIQKRTAP5-5
ClinGenKRTAP5-5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD439915
Chemical/Pharm GKB GenePA134889326
Clinical trialKRTAP5-5
Miscellaneous
canSAR (ICR)KRTAP5-5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP5-5
EVEXKRTAP5-5
GoPubMedKRTAP5-5
iHOPKRTAP5-5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:12:24 CEST 2017
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.