Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KRTAP5-6 (keratin associated protein 5-6)

Identity

Alias_symbol (synonym)KRTAP5.6
Other alias
HGNC (Hugo) KRTAP5-6
LocusID (NCBI) 440023
Atlas_Id 65126
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 1697195 and ends at 1697755 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP5-6   23600
Cards
Entrez_Gene (NCBI)KRTAP5-6  440023  keratin associated protein 5-6
AliasesKRTAP5.6
GeneCards (Weizmann)KRTAP5-6
Ensembl hg19 (Hinxton)ENSG00000205864 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205864 [Gene_View]  chr11:1697195-1697755 [Contig_View]  KRTAP5-6 [Vega]
ICGC DataPortalENSG00000205864
TCGA cBioPortalKRTAP5-6
AceView (NCBI)KRTAP5-6
Genatlas (Paris)KRTAP5-6
WikiGenes440023
SOURCE (Princeton)KRTAP5-6
Genetics Home Reference (NIH)KRTAP5-6
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP5-6  -     chr11:1697195-1697755 +  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP5-6  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblKRTAP5-6 - 11p15.5 [CytoView hg19]  KRTAP5-6 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIKRTAP5-6 [Mapview hg19]  KRTAP5-6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB126075 BC130399 BC133035
RefSeq transcript (Entrez)NM_001012416
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_187657
Consensus coding sequences : CCDS (NCBI)KRTAP5-6
Cluster EST : UnigeneHs.534863 [ NCBI ]
CGAP (NCI)Hs.534863
Alternative Splicing GalleryENSG00000205864
Gene ExpressionKRTAP5-6 [ NCBI-GEO ]   KRTAP5-6 [ EBI - ARRAY_EXPRESS ]   KRTAP5-6 [ SEEK ]   KRTAP5-6 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP5-6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440023
GTEX Portal (Tissue expression)KRTAP5-6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6L8G9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6L8G9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6L8G9
Splice isoforms : SwissVarQ6L8G9
PhosPhoSitePlusQ6L8G9
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRTAP5-6
DMDM Disease mutations440023
Blocks (Seattle)KRTAP5-6
SuperfamilyQ6L8G9
Human Protein AtlasENSG00000205864
Peptide AtlasQ6L8G9
HPRD17250
IPIIPI00438000   
Protein Interaction databases
DIP (DOE-UCLA)Q6L8G9
IntAct (EBI)Q6L8G9
FunCoupENSG00000205864
BioGRIDKRTAP5-6
STRING (EMBL)KRTAP5-6
ZODIACKRTAP5-6
Ontologies - Pathways
QuickGOQ6L8G9
Ontology : AmiGOprotein binding  cytosol  keratinization  keratin filament  
Ontology : EGO-EBIprotein binding  cytosol  keratinization  keratin filament  
NDEx NetworkKRTAP5-6
Atlas of Cancer Signalling NetworkKRTAP5-6
Wikipedia pathwaysKRTAP5-6
Orthology - Evolution
OrthoDB440023
GeneTree (enSembl)ENSG00000205864
Phylogenetic Trees/Animal Genes : TreeFamKRTAP5-6
HOVERGENQ6L8G9
HOGENOMQ6L8G9
Homologs : HomoloGeneKRTAP5-6
Homology/Alignments : Family Browser (UCSC)KRTAP5-6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP5-6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP5-6
dbVarKRTAP5-6
ClinVarKRTAP5-6
1000_GenomesKRTAP5-6 
Exome Variant ServerKRTAP5-6
ExAC (Exome Aggregation Consortium)KRTAP5-6 (select the gene name)
Genetic variants : HAPMAP440023
Genomic Variants (DGV)KRTAP5-6 [DGVbeta]
DECIPHERKRTAP5-6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP5-6 
Mutations
ICGC Data PortalKRTAP5-6 
TCGA Data PortalKRTAP5-6 
Broad Tumor PortalKRTAP5-6
OASIS PortalKRTAP5-6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP5-6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP5-6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP5-6
DgiDB (Drug Gene Interaction Database)KRTAP5-6
DoCM (Curated mutations)KRTAP5-6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP5-6 (select a term)
intoGenKRTAP5-6
Cancer3DKRTAP5-6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP5-6
Genetic Testing Registry KRTAP5-6
NextProtQ6L8G9 [Medical]
TSGene440023
GENETestsKRTAP5-6
Target ValidationKRTAP5-6
Huge Navigator KRTAP5-6 [HugePedia]
snp3D : Map Gene to Disease440023
BioCentury BCIQKRTAP5-6
ClinGenKRTAP5-6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440023
Chemical/Pharm GKB GenePA134922071
Clinical trialKRTAP5-6
Miscellaneous
canSAR (ICR)KRTAP5-6 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP5-6
EVEXKRTAP5-6
GoPubMedKRTAP5-6
iHOPKRTAP5-6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:55:22 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.