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KRTAP5-7 (keratin associated protein 5-7)

Identity

Alias_symbol (synonym)KRTAP5.7
KRTAP5-3
Other alias
HGNC (Hugo) KRTAP5-7
LocusID (NCBI) 440050
Atlas_Id 65127
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 71527267 and ends at 71528164 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP5-7   23602
Cards
Entrez_Gene (NCBI)KRTAP5-7  440050  keratin associated protein 5-7
AliasesKRTAP5-3; KRTAP5.7
GeneCards (Weizmann)KRTAP5-7
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:71527267-71528164 [Contig_View]  KRTAP5-7 [Vega]
TCGA cBioPortalKRTAP5-7
AceView (NCBI)KRTAP5-7
Genatlas (Paris)KRTAP5-7
WikiGenes440050
SOURCE (Princeton)KRTAP5-7
Genetics Home Reference (NIH)KRTAP5-7
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP5-7  -     chr11:71527267-71528164 +  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP5-7  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblKRTAP5-7 - 11q13.4 [CytoView hg19]  KRTAP5-7 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBIKRTAP5-7 [Mapview hg19]  KRTAP5-7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB126076 AJ628243 BC136967 BC136968 BC148790
RefSeq transcript (Entrez)NM_001012503
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP5-7
Cluster EST : UnigeneHs.710675 [ NCBI ]
CGAP (NCI)Hs.710675
Gene ExpressionKRTAP5-7 [ NCBI-GEO ]   KRTAP5-7 [ EBI - ARRAY_EXPRESS ]   KRTAP5-7 [ SEEK ]   KRTAP5-7 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP5-7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440050
GTEX Portal (Tissue expression)KRTAP5-7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6L8G8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6L8G8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6L8G8
Splice isoforms : SwissVarQ6L8G8
PhosPhoSitePlusQ6L8G8
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRTAP5-7
DMDM Disease mutations440050
Blocks (Seattle)KRTAP5-7
SuperfamilyQ6L8G8
Peptide AtlasQ6L8G8
HPRD17251
IPIIPI00437999   
Protein Interaction databases
DIP (DOE-UCLA)Q6L8G8
IntAct (EBI)Q6L8G8
BioGRIDKRTAP5-7
STRING (EMBL)KRTAP5-7
ZODIACKRTAP5-7
Ontologies - Pathways
QuickGOQ6L8G8
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP5-7
Atlas of Cancer Signalling NetworkKRTAP5-7
Wikipedia pathwaysKRTAP5-7
Orthology - Evolution
OrthoDB440050
Phylogenetic Trees/Animal Genes : TreeFamKRTAP5-7
HOVERGENQ6L8G8
HOGENOMQ6L8G8
Homologs : HomoloGeneKRTAP5-7
Homology/Alignments : Family Browser (UCSC)KRTAP5-7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP5-7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP5-7
dbVarKRTAP5-7
ClinVarKRTAP5-7
1000_GenomesKRTAP5-7 
Exome Variant ServerKRTAP5-7
ExAC (Exome Aggregation Consortium)KRTAP5-7 (select the gene name)
Genetic variants : HAPMAP440050
Genomic Variants (DGV)KRTAP5-7 [DGVbeta]
DECIPHERKRTAP5-7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP5-7 
Mutations
ICGC Data PortalKRTAP5-7 
TCGA Data PortalKRTAP5-7 
Broad Tumor PortalKRTAP5-7
OASIS PortalKRTAP5-7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP5-7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP5-7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP5-7
DgiDB (Drug Gene Interaction Database)KRTAP5-7
DoCM (Curated mutations)KRTAP5-7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP5-7 (select a term)
intoGenKRTAP5-7
Cancer3DKRTAP5-7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP5-7
Genetic Testing Registry KRTAP5-7
NextProtQ6L8G8 [Medical]
TSGene440050
GENETestsKRTAP5-7
Target ValidationKRTAP5-7
Huge Navigator KRTAP5-7 [HugePedia]
snp3D : Map Gene to Disease440050
BioCentury BCIQKRTAP5-7
ClinGenKRTAP5-7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440050
Chemical/Pharm GKB GenePA134880610
Clinical trialKRTAP5-7
Miscellaneous
canSAR (ICR)KRTAP5-7 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP5-7
EVEXKRTAP5-7
GoPubMedKRTAP5-7
iHOPKRTAP5-7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:22 CEST 2017

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