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KRTAP5-8 (keratin associated protein 5-8)

Identity

Alias_symbol (synonym)KRTAP5.8
UHSKerB
KRTAP5-2
Other alias
HGNC (Hugo) KRTAP5-8
LocusID (NCBI) 57830
Atlas_Id 65128
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 71538025 and ends at 71539207 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP5-8   23603
Cards
Entrez_Gene (NCBI)KRTAP5-8  57830  keratin associated protein 5-8
AliasesKRTAP5-2; KRTAP5.8; UHSKerB
GeneCards (Weizmann)KRTAP5-8
Ensembl hg19 (Hinxton)ENSG00000241233 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241233 [Gene_View]  chr11:71538025-71539207 [Contig_View]  KRTAP5-8 [Vega]
ICGC DataPortalENSG00000241233
TCGA cBioPortalKRTAP5-8
AceView (NCBI)KRTAP5-8
Genatlas (Paris)KRTAP5-8
WikiGenes57830
SOURCE (Princeton)KRTAP5-8
Genetics Home Reference (NIH)KRTAP5-8
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP5-8  -     chr11:71538025-71539207 +  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP5-8  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblKRTAP5-8 - 11q13.4 [CytoView hg19]  KRTAP5-8 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBIKRTAP5-8 [Mapview hg19]  KRTAP5-8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB126077 AY360461 BC119736 BC160147 BX099510
RefSeq transcript (Entrez)NM_021046
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP5-8
Cluster EST : UnigeneHs.445245 [ NCBI ]
CGAP (NCI)Hs.445245
Alternative Splicing GalleryENSG00000241233
Gene ExpressionKRTAP5-8 [ NCBI-GEO ]   KRTAP5-8 [ EBI - ARRAY_EXPRESS ]   KRTAP5-8 [ SEEK ]   KRTAP5-8 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP5-8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57830
GTEX Portal (Tissue expression)KRTAP5-8
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75690   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75690  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75690
Splice isoforms : SwissVarO75690
PhosPhoSitePlusO75690
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRTAP5-8
DMDM Disease mutations57830
Blocks (Seattle)KRTAP5-8
SuperfamilyO75690
Human Protein AtlasENSG00000241233
Peptide AtlasO75690
HPRD17252
IPIIPI00026620   
Protein Interaction databases
DIP (DOE-UCLA)O75690
IntAct (EBI)O75690
FunCoupENSG00000241233
BioGRIDKRTAP5-8
STRING (EMBL)KRTAP5-8
ZODIACKRTAP5-8
Ontologies - Pathways
QuickGOO75690
Ontology : AmiGOcytosol  biological_process  structural constituent of epidermis  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  biological_process  structural constituent of epidermis  keratinization  keratin filament  
NDEx NetworkKRTAP5-8
Atlas of Cancer Signalling NetworkKRTAP5-8
Wikipedia pathwaysKRTAP5-8
Orthology - Evolution
OrthoDB57830
GeneTree (enSembl)ENSG00000241233
Phylogenetic Trees/Animal Genes : TreeFamKRTAP5-8
HOVERGENO75690
HOGENOMO75690
Homologs : HomoloGeneKRTAP5-8
Homology/Alignments : Family Browser (UCSC)KRTAP5-8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP5-8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP5-8
dbVarKRTAP5-8
ClinVarKRTAP5-8
1000_GenomesKRTAP5-8 
Exome Variant ServerKRTAP5-8
ExAC (Exome Aggregation Consortium)KRTAP5-8 (select the gene name)
Genetic variants : HAPMAP57830
Genomic Variants (DGV)KRTAP5-8 [DGVbeta]
DECIPHERKRTAP5-8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP5-8 
Mutations
ICGC Data PortalKRTAP5-8 
TCGA Data PortalKRTAP5-8 
Broad Tumor PortalKRTAP5-8
OASIS PortalKRTAP5-8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP5-8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP5-8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP5-8
DgiDB (Drug Gene Interaction Database)KRTAP5-8
DoCM (Curated mutations)KRTAP5-8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP5-8 (select a term)
intoGenKRTAP5-8
Cancer3DKRTAP5-8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP5-8
Genetic Testing Registry KRTAP5-8
NextProtO75690 [Medical]
TSGene57830
GENETestsKRTAP5-8
Target ValidationKRTAP5-8
Huge Navigator KRTAP5-8 [HugePedia]
snp3D : Map Gene to Disease57830
BioCentury BCIQKRTAP5-8
ClinGenKRTAP5-8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57830
Chemical/Pharm GKB GenePA134954599
Clinical trialKRTAP5-8
Miscellaneous
canSAR (ICR)KRTAP5-8 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP5-8
EVEXKRTAP5-8
GoPubMedKRTAP5-8
iHOPKRTAP5-8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:24 CEST 2017

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