Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP5-9 (keratin associated protein 5-9)

Identity

Alias_namesKRN1
Alias_symbol (synonym)KRTAP5.9
KRTAP5-1
Other alias
HGNC (Hugo) KRTAP5-9
LocusID (NCBI) 3846
Atlas_Id 65129
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 71548420 and ends at 71549607 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP5-9   23604
Cards
Entrez_Gene (NCBI)KRTAP5-9  3846  keratin associated protein 5-9
AliasesKRN1; KRTAP5-1; KRTAP5.9
GeneCards (Weizmann)KRTAP5-9
Ensembl hg19 (Hinxton)ENSG00000254997 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254997 [Gene_View]  chr11:71548420-71549607 [Contig_View]  KRTAP5-9 [Vega]
ICGC DataPortalENSG00000254997
TCGA cBioPortalKRTAP5-9
AceView (NCBI)KRTAP5-9
Genatlas (Paris)KRTAP5-9
WikiGenes3846
SOURCE (Princeton)KRTAP5-9
Genetics Home Reference (NIH)KRTAP5-9
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP5-9  -     chr11:71548420-71549607 +  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP5-9  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblKRTAP5-9 - 11q13.4 [CytoView hg19]  KRTAP5-9 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBIKRTAP5-9 [Mapview hg19]  KRTAP5-9 [Mapview hg38]
OMIM148021   
Gene and transcription
Genbank (Entrez)AB126078 BC069531 BC101744 DB339866 HQ448422
RefSeq transcript (Entrez)NM_005553
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP5-9
Cluster EST : UnigeneHs.709220 [ NCBI ]
CGAP (NCI)Hs.709220
Alternative Splicing GalleryENSG00000254997
Gene ExpressionKRTAP5-9 [ NCBI-GEO ]   KRTAP5-9 [ EBI - ARRAY_EXPRESS ]   KRTAP5-9 [ SEEK ]   KRTAP5-9 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP5-9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3846
GTEX Portal (Tissue expression)KRTAP5-9
Human Protein AtlasENSG00000254997-KRTAP5-9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP26371   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP26371  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP26371
Splice isoforms : SwissVarP26371
PhosPhoSitePlusP26371
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRTAP5-9
DMDM Disease mutations3846
Blocks (Seattle)KRTAP5-9
SuperfamilyP26371
Human Protein Atlas [tissue]ENSG00000254997-KRTAP5-9 [tissue]
Peptide AtlasP26371
HPRD01008
IPIIPI00478735   
Protein Interaction databases
DIP (DOE-UCLA)P26371
IntAct (EBI)P26371
FunCoupENSG00000254997
BioGRIDKRTAP5-9
STRING (EMBL)KRTAP5-9
ZODIACKRTAP5-9
Ontologies - Pathways
QuickGOP26371
Ontology : AmiGOprotein binding  cytosol  epidermis development  keratinization  keratin filament  
Ontology : EGO-EBIprotein binding  cytosol  epidermis development  keratinization  keratin filament  
NDEx NetworkKRTAP5-9
Atlas of Cancer Signalling NetworkKRTAP5-9
Wikipedia pathwaysKRTAP5-9
Orthology - Evolution
OrthoDB3846
GeneTree (enSembl)ENSG00000254997
Phylogenetic Trees/Animal Genes : TreeFamKRTAP5-9
HOVERGENP26371
HOGENOMP26371
Homologs : HomoloGeneKRTAP5-9
Homology/Alignments : Family Browser (UCSC)KRTAP5-9
Gene fusions - Rearrangements
Tumor Fusion PortalKRTAP5-9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP5-9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP5-9
dbVarKRTAP5-9
ClinVarKRTAP5-9
1000_GenomesKRTAP5-9 
Exome Variant ServerKRTAP5-9
ExAC (Exome Aggregation Consortium)ENSG00000254997
GNOMAD BrowserENSG00000254997
Genetic variants : HAPMAP3846
Genomic Variants (DGV)KRTAP5-9 [DGVbeta]
DECIPHERKRTAP5-9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP5-9 
Mutations
ICGC Data PortalKRTAP5-9 
TCGA Data PortalKRTAP5-9 
Broad Tumor PortalKRTAP5-9
OASIS PortalKRTAP5-9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP5-9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP5-9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP5-9
DgiDB (Drug Gene Interaction Database)KRTAP5-9
DoCM (Curated mutations)KRTAP5-9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP5-9 (select a term)
intoGenKRTAP5-9
Cancer3DKRTAP5-9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM148021   
Orphanet
DisGeNETKRTAP5-9
MedgenKRTAP5-9
Genetic Testing Registry KRTAP5-9
NextProtP26371 [Medical]
TSGene3846
GENETestsKRTAP5-9
Target ValidationKRTAP5-9
Huge Navigator KRTAP5-9 [HugePedia]
snp3D : Map Gene to Disease3846
BioCentury BCIQKRTAP5-9
ClinGenKRTAP5-9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3846
Chemical/Pharm GKB GenePA134946701
Clinical trialKRTAP5-9
Miscellaneous
canSAR (ICR)KRTAP5-9 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP5-9
EVEXKRTAP5-9
GoPubMedKRTAP5-9
iHOPKRTAP5-9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:23:41 CET 2017

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