Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KRTAP5-AS1 (KRTAP5-1/KRTAP5-2 antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) KRTAP5-AS1
LocusID (NCBI) 338651
Atlas_Id 65130
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 1572741 and ends at 1599184 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP5-AS1   27877
Cards
Entrez_Gene (NCBI)KRTAP5-AS1  338651  KRTAP5-1/KRTAP5-2 antisense RNA 1
Aliases
GeneCards (Weizmann)KRTAP5-AS1
Ensembl hg19 (Hinxton)ENSG00000233930 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233930 [Gene_View]  chr11:1572741-1599184 [Contig_View]  KRTAP5-AS1 [Vega]
ICGC DataPortalENSG00000233930
TCGA cBioPortalKRTAP5-AS1
AceView (NCBI)KRTAP5-AS1
Genatlas (Paris)KRTAP5-AS1
WikiGenes338651
SOURCE (Princeton)KRTAP5-AS1
Genetics Home Reference (NIH)KRTAP5-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP5-AS1  -     chr11:1572741-1599184 +  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP5-AS1  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblKRTAP5-AS1 - 11p15.5 [CytoView hg19]  KRTAP5-AS1 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIKRTAP5-AS1 [Mapview hg19]  KRTAP5-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055141 AK057910 DA040009 DA061271
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_187584 NT_187657
Consensus coding sequences : CCDS (NCBI)KRTAP5-AS1
Cluster EST : UnigeneHs.673618 [ NCBI ]
CGAP (NCI)Hs.673618
Alternative Splicing GalleryENSG00000233930
Gene ExpressionKRTAP5-AS1 [ NCBI-GEO ]   KRTAP5-AS1 [ EBI - ARRAY_EXPRESS ]   KRTAP5-AS1 [ SEEK ]   KRTAP5-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP5-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)338651
GTEX Portal (Tissue expression)KRTAP5-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRTAP5-AS1
DMDM Disease mutations338651
Blocks (Seattle)KRTAP5-AS1
Human Protein AtlasENSG00000233930
IPIIPI00289382   IPI00847909   
Protein Interaction databases
FunCoupENSG00000233930
BioGRIDKRTAP5-AS1
STRING (EMBL)KRTAP5-AS1
ZODIACKRTAP5-AS1
Ontologies - Pathways
Huge Navigator KRTAP5-AS1 [HugePedia]
snp3D : Map Gene to Disease338651
BioCentury BCIQKRTAP5-AS1
ClinGenKRTAP5-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338651
Clinical trialKRTAP5-AS1
Miscellaneous
canSAR (ICR)KRTAP5-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP5-AS1
EVEXKRTAP5-AS1
GoPubMedKRTAP5-AS1
iHOPKRTAP5-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:55:23 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.