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KRTAP6-1 (keratin associated protein 6-1)

Identity

Alias_symbol (synonym)KAP6.1
C21orf103
Other alias
HGNC (Hugo) KRTAP6-1
LocusID (NCBI) 337966
Atlas_Id 65131
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 31986005 and ends at 31986223 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP6-1   18931
Cards
Entrez_Gene (NCBI)KRTAP6-1  337966  keratin associated protein 6-1
AliasesC21orf103; KAP6.1
GeneCards (Weizmann)KRTAP6-1
Ensembl hg19 (Hinxton) [Gene_View]  chr21:31986005-31986223 [Contig_View]  KRTAP6-1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:31986005-31986223 [Contig_View]  KRTAP6-1 [Vega]
TCGA cBioPortalKRTAP6-1
AceView (NCBI)KRTAP6-1
Genatlas (Paris)KRTAP6-1
WikiGenes337966
SOURCE (Princeton)KRTAP6-1
Genetics Home Reference (NIH)KRTAP6-1
Genomic and cartography
GoldenPath hg19 (UCSC)KRTAP6-1  -     chr21:31986005-31986223 -  21q22.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRTAP6-1  -     21q22.11   [Description]    (hg38-Dec_2013)
EnsemblKRTAP6-1 - 21q22.11 [CytoView hg19]  KRTAP6-1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP6-1 [Mapview hg19]  KRTAP6-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096954 BC104426 BC104427 BC148582 BC153091
RefSeq transcript (Entrez)NM_181602
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)KRTAP6-1
Cluster EST : UnigeneHs.553689 [ NCBI ]
CGAP (NCI)Hs.553689
Gene ExpressionKRTAP6-1 [ NCBI-GEO ]   KRTAP6-1 [ EBI - ARRAY_EXPRESS ]   KRTAP6-1 [ SEEK ]   KRTAP6-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP6-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337966
GTEX Portal (Tissue expression)KRTAP6-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI64
Splice isoforms : SwissVarQ3LI64
PhosPhoSitePlusQ3LI64
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRTAP6-1
DMDM Disease mutations337966
Blocks (Seattle)KRTAP6-1
SuperfamilyQ3LI64
Peptide AtlasQ3LI64
HPRD11218
IPIIPI00332220   IPI01013494   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI64
IntAct (EBI)Q3LI64
BioGRIDKRTAP6-1
STRING (EMBL)KRTAP6-1
ZODIACKRTAP6-1
Ontologies - Pathways
QuickGOQ3LI64
Ontology : AmiGOcytosol  intermediate filament  
Ontology : EGO-EBIcytosol  intermediate filament  
NDEx NetworkKRTAP6-1
Atlas of Cancer Signalling NetworkKRTAP6-1
Wikipedia pathwaysKRTAP6-1
Orthology - Evolution
OrthoDB337966
Phylogenetic Trees/Animal Genes : TreeFamKRTAP6-1
HOVERGENQ3LI64
HOGENOMQ3LI64
Homologs : HomoloGeneKRTAP6-1
Homology/Alignments : Family Browser (UCSC)KRTAP6-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP6-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP6-1
dbVarKRTAP6-1
ClinVarKRTAP6-1
1000_GenomesKRTAP6-1 
Exome Variant ServerKRTAP6-1
ExAC (Exome Aggregation Consortium)KRTAP6-1 (select the gene name)
Genetic variants : HAPMAP337966
Genomic Variants (DGV)KRTAP6-1 [DGVbeta]
DECIPHER (Syndromes)21:31986005-31986223  
CONAN: Copy Number AnalysisKRTAP6-1 
Mutations
ICGC Data PortalKRTAP6-1 
TCGA Data PortalKRTAP6-1 
Broad Tumor PortalKRTAP6-1
OASIS PortalKRTAP6-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP6-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP6-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP6-1
DgiDB (Drug Gene Interaction Database)KRTAP6-1
DoCM (Curated mutations)KRTAP6-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP6-1 (select a term)
intoGenKRTAP6-1
Cancer3DKRTAP6-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP6-1
Genetic Testing Registry KRTAP6-1
NextProtQ3LI64 [Medical]
TSGene337966
GENETestsKRTAP6-1
Huge Navigator KRTAP6-1 [HugePedia]
snp3D : Map Gene to Disease337966
BioCentury BCIQKRTAP6-1
ClinGenKRTAP6-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337966
Chemical/Pharm GKB GenePA134988301
Clinical trialKRTAP6-1
Miscellaneous
canSAR (ICR)KRTAP6-1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP6-1
EVEXKRTAP6-1
GoPubMedKRTAP6-1
iHOPKRTAP6-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:36 CET 2017

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