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KRTAP6-2 (keratin associated protein 6-2)

Identity

Alias_symbol (synonym)KAP6.2
Other alias
HGNC (Hugo) KRTAP6-2
LocusID (NCBI) 337967
Atlas_Id 65132
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30598686 and ends at 30598874 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP6-2   18932
Cards
Entrez_Gene (NCBI)KRTAP6-2  337967  keratin associated protein 6-2
AliasesKAP6.2
GeneCards (Weizmann)KRTAP6-2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:30598686-30598874 [Contig_View]  KRTAP6-2 [Vega]
TCGA cBioPortalKRTAP6-2
AceView (NCBI)KRTAP6-2
Genatlas (Paris)KRTAP6-2
WikiGenes337967
SOURCE (Princeton)KRTAP6-2
Genetics Home Reference (NIH)KRTAP6-2
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP6-2  -     chr21:30598686-30598874 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP6-2  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP6-2 - 21q22.11 [CytoView hg19]  KRTAP6-2 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP6-2 [Mapview hg19]  KRTAP6-2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096952 BC093915 BC093917 BC141488 BC148771
RefSeq transcript (Entrez)NM_181604
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP6-2
Cluster EST : UnigeneHs.553690 [ NCBI ]
CGAP (NCI)Hs.553690
Gene ExpressionKRTAP6-2 [ NCBI-GEO ]   KRTAP6-2 [ EBI - ARRAY_EXPRESS ]   KRTAP6-2 [ SEEK ]   KRTAP6-2 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP6-2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337967
GTEX Portal (Tissue expression)KRTAP6-2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI66   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI66  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI66
Splice isoforms : SwissVarQ3LI66
PhosPhoSitePlusQ3LI66
Domains : Interpro (EBI)KRTAP_type6/8/16/19/20/21   
Domain families : Pfam (Sanger)KRTAP (PF11759)   
Domain families : Pfam (NCBI)pfam11759   
Conserved Domain (NCBI)KRTAP6-2
DMDM Disease mutations337967
Blocks (Seattle)KRTAP6-2
SuperfamilyQ3LI66
Peptide AtlasQ3LI66
HPRD11219
IPIIPI00373948   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI66
IntAct (EBI)Q3LI66
BioGRIDKRTAP6-2
STRING (EMBL)KRTAP6-2
ZODIACKRTAP6-2
Ontologies - Pathways
QuickGOQ3LI66
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP6-2
Atlas of Cancer Signalling NetworkKRTAP6-2
Wikipedia pathwaysKRTAP6-2
Orthology - Evolution
OrthoDB337967
Phylogenetic Trees/Animal Genes : TreeFamKRTAP6-2
HOVERGENQ3LI66
HOGENOMQ3LI66
Homologs : HomoloGeneKRTAP6-2
Homology/Alignments : Family Browser (UCSC)KRTAP6-2
Gene fusions - Rearrangements
Tumor Fusion PortalKRTAP6-2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP6-2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP6-2
dbVarKRTAP6-2
ClinVarKRTAP6-2
1000_GenomesKRTAP6-2 
Exome Variant ServerKRTAP6-2
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP337967
Genomic Variants (DGV)KRTAP6-2 [DGVbeta]
DECIPHERKRTAP6-2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP6-2 
Mutations
ICGC Data PortalKRTAP6-2 
TCGA Data PortalKRTAP6-2 
Broad Tumor PortalKRTAP6-2
OASIS PortalKRTAP6-2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP6-2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP6-2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP6-2
DgiDB (Drug Gene Interaction Database)KRTAP6-2
DoCM (Curated mutations)KRTAP6-2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP6-2 (select a term)
intoGenKRTAP6-2
Cancer3DKRTAP6-2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETKRTAP6-2
MedgenKRTAP6-2
Genetic Testing Registry KRTAP6-2
NextProtQ3LI66 [Medical]
TSGene337967
GENETestsKRTAP6-2
Target ValidationKRTAP6-2
Huge Navigator KRTAP6-2 [HugePedia]
snp3D : Map Gene to Disease337967
BioCentury BCIQKRTAP6-2
ClinGenKRTAP6-2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337967
Chemical/Pharm GKB GenePA134980095
Clinical trialKRTAP6-2
Miscellaneous
canSAR (ICR)KRTAP6-2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP6-2
EVEXKRTAP6-2
GoPubMedKRTAP6-2
iHOPKRTAP6-2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:42:52 CET 2017

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