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KRTAP6-3 (keratin associated protein 6-3)

Identity

Alias_symbol (synonym)KAP6.3
Other alias
HGNC (Hugo) KRTAP6-3
LocusID (NCBI) 337968
Atlas_Id 65133
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30592440 and ends at 30593055 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP6-3   18933
Cards
Entrez_Gene (NCBI)KRTAP6-3  337968  keratin associated protein 6-3
AliasesKAP6.3
GeneCards (Weizmann)KRTAP6-3
Ensembl hg19 (Hinxton)ENSG00000212938 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212938 [Gene_View]  chr21:30592440-30593055 [Contig_View]  KRTAP6-3 [Vega]
ICGC DataPortalENSG00000212938
TCGA cBioPortalKRTAP6-3
AceView (NCBI)KRTAP6-3
Genatlas (Paris)KRTAP6-3
WikiGenes337968
SOURCE (Princeton)KRTAP6-3
Genetics Home Reference (NIH)KRTAP6-3
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP6-3  -     chr21:30592440-30593055 +  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP6-3  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP6-3 - 21q22.11 [CytoView hg19]  KRTAP6-3 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP6-3 [Mapview hg19]  KRTAP6-3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096951 BC101121 BC101122 BC118547 BC118624
RefSeq transcript (Entrez)NM_181605
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP6-3
Cluster EST : UnigeneHs.553691 [ NCBI ]
CGAP (NCI)Hs.553691
Alternative Splicing GalleryENSG00000212938
Gene ExpressionKRTAP6-3 [ NCBI-GEO ]   KRTAP6-3 [ EBI - ARRAY_EXPRESS ]   KRTAP6-3 [ SEEK ]   KRTAP6-3 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP6-3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337968
GTEX Portal (Tissue expression)KRTAP6-3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI67
Splice isoforms : SwissVarQ3LI67
PhosPhoSitePlusQ3LI67
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRTAP6-3
DMDM Disease mutations337968
Blocks (Seattle)KRTAP6-3
SuperfamilyQ3LI67
Human Protein AtlasENSG00000212938
Peptide AtlasQ3LI67
HPRD11220
IPIIPI00332221   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI67
IntAct (EBI)Q3LI67
FunCoupENSG00000212938
BioGRIDKRTAP6-3
STRING (EMBL)KRTAP6-3
ZODIACKRTAP6-3
Ontologies - Pathways
QuickGOQ3LI67
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP6-3
Atlas of Cancer Signalling NetworkKRTAP6-3
Wikipedia pathwaysKRTAP6-3
Orthology - Evolution
OrthoDB337968
GeneTree (enSembl)ENSG00000212938
Phylogenetic Trees/Animal Genes : TreeFamKRTAP6-3
HOVERGENQ3LI67
HOGENOMQ3LI67
Homologs : HomoloGeneKRTAP6-3
Homology/Alignments : Family Browser (UCSC)KRTAP6-3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP6-3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP6-3
dbVarKRTAP6-3
ClinVarKRTAP6-3
1000_GenomesKRTAP6-3 
Exome Variant ServerKRTAP6-3
ExAC (Exome Aggregation Consortium)KRTAP6-3 (select the gene name)
Genetic variants : HAPMAP337968
Genomic Variants (DGV)KRTAP6-3 [DGVbeta]
DECIPHERKRTAP6-3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP6-3 
Mutations
ICGC Data PortalKRTAP6-3 
TCGA Data PortalKRTAP6-3 
Broad Tumor PortalKRTAP6-3
OASIS PortalKRTAP6-3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP6-3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP6-3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP6-3
DgiDB (Drug Gene Interaction Database)KRTAP6-3
DoCM (Curated mutations)KRTAP6-3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP6-3 (select a term)
intoGenKRTAP6-3
Cancer3DKRTAP6-3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP6-3
Genetic Testing Registry KRTAP6-3
NextProtQ3LI67 [Medical]
TSGene337968
GENETestsKRTAP6-3
Target ValidationKRTAP6-3
Huge Navigator KRTAP6-3 [HugePedia]
snp3D : Map Gene to Disease337968
BioCentury BCIQKRTAP6-3
ClinGenKRTAP6-3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337968
Chemical/Pharm GKB GenePA134866119
Clinical trialKRTAP6-3
Miscellaneous
canSAR (ICR)KRTAP6-3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP6-3
EVEXKRTAP6-3
GoPubMedKRTAP6-3
iHOPKRTAP6-3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:25 CEST 2017

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