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KRTAP7-1 (keratin associated protein 7-1 (gene/pseudogene))

Identity

Alias_nameskeratin associated protein 7-1
Alias_symbol (synonym)KAP7.1
Other alias
HGNC (Hugo) KRTAP7-1
LocusID (NCBI) 337878
Atlas_Id 65134
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30829040 and ends at 30829732 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP7-1   18934
Cards
Entrez_Gene (NCBI)KRTAP7-1  337878  keratin associated protein 7-1 (gene/pseudogene)
AliasesKAP7.1
GeneCards (Weizmann)KRTAP7-1
Ensembl hg19 (Hinxton)ENSG00000274749 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274749 [Gene_View]  chr21:30829040-30829732 [Contig_View]  KRTAP7-1 [Vega]
ICGC DataPortalENSG00000274749
TCGA cBioPortalKRTAP7-1
AceView (NCBI)KRTAP7-1
Genatlas (Paris)KRTAP7-1
WikiGenes337878
SOURCE (Princeton)KRTAP7-1
Genetics Home Reference (NIH)KRTAP7-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP7-1  -     chr21:30829040-30829732 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP7-1  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP7-1 - 21q22.11 [CytoView hg19]  KRTAP7-1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP7-1 [Mapview hg19]  KRTAP7-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096962 AJ457063
RefSeq transcript (Entrez)NM_181606
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP7-1
Cluster EST : UnigeneHs.407656 [ NCBI ]
CGAP (NCI)Hs.407656
Alternative Splicing GalleryENSG00000274749
Gene ExpressionKRTAP7-1 [ NCBI-GEO ]   KRTAP7-1 [ EBI - ARRAY_EXPRESS ]   KRTAP7-1 [ SEEK ]   KRTAP7-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP7-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337878
GTEX Portal (Tissue expression)KRTAP7-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUC3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUC3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUC3
Splice isoforms : SwissVarQ8IUC3
PhosPhoSitePlusQ8IUC3
Domains : Interpro (EBI)KRTAP7   
Domain families : Pfam (Sanger)KRTAP7 (PF15034)   
Domain families : Pfam (NCBI)pfam15034   
Domain structure : Prodom (Prabi Lyon)Keratin-associated_7 (PD061258)   
Conserved Domain (NCBI)KRTAP7-1
DMDM Disease mutations337878
Blocks (Seattle)KRTAP7-1
SuperfamilyQ8IUC3
Human Protein AtlasENSG00000274749
Peptide AtlasQ8IUC3
IPIIPI00216713   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUC3
IntAct (EBI)Q8IUC3
FunCoupENSG00000274749
BioGRIDKRTAP7-1
STRING (EMBL)KRTAP7-1
ZODIACKRTAP7-1
Ontologies - Pathways
QuickGOQ8IUC3
Ontology : AmiGOintermediate filament  
Ontology : EGO-EBIintermediate filament  
NDEx NetworkKRTAP7-1
Atlas of Cancer Signalling NetworkKRTAP7-1
Wikipedia pathwaysKRTAP7-1
Orthology - Evolution
OrthoDB337878
GeneTree (enSembl)ENSG00000274749
Phylogenetic Trees/Animal Genes : TreeFamKRTAP7-1
HOVERGENQ8IUC3
HOGENOMQ8IUC3
Homologs : HomoloGeneKRTAP7-1
Homology/Alignments : Family Browser (UCSC)KRTAP7-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP7-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP7-1
dbVarKRTAP7-1
ClinVarKRTAP7-1
1000_GenomesKRTAP7-1 
Exome Variant ServerKRTAP7-1
ExAC (Exome Aggregation Consortium)KRTAP7-1 (select the gene name)
Genetic variants : HAPMAP337878
Genomic Variants (DGV)KRTAP7-1 [DGVbeta]
DECIPHERKRTAP7-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP7-1 
Mutations
ICGC Data PortalKRTAP7-1 
TCGA Data PortalKRTAP7-1 
Broad Tumor PortalKRTAP7-1
OASIS PortalKRTAP7-1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKRTAP7-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP7-1
DgiDB (Drug Gene Interaction Database)KRTAP7-1
DoCM (Curated mutations)KRTAP7-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP7-1 (select a term)
intoGenKRTAP7-1
Cancer3DKRTAP7-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP7-1
Genetic Testing Registry KRTAP7-1
NextProtQ8IUC3 [Medical]
TSGene337878
GENETestsKRTAP7-1
Target ValidationKRTAP7-1
Huge Navigator KRTAP7-1 [HugePedia]
snp3D : Map Gene to Disease337878
BioCentury BCIQKRTAP7-1
ClinGenKRTAP7-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337878
Chemical/Pharm GKB GenePA134993282
Clinical trialKRTAP7-1
Miscellaneous
canSAR (ICR)KRTAP7-1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP7-1
EVEXKRTAP7-1
GoPubMedKRTAP7-1
iHOPKRTAP7-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:25 CEST 2017

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