Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KRTAP8-1 (keratin associated protein 8-1)

Identity

Alias_symbol (synonym)KAP8.1
Other alias
HGNC (Hugo) KRTAP8-1
LocusID (NCBI) 337879
Atlas_Id 65135
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30812697 and ends at 30813252 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP8-1   18935
Cards
Entrez_Gene (NCBI)KRTAP8-1  337879  keratin associated protein 8-1
AliasesKAP8.1
GeneCards (Weizmann)KRTAP8-1
Ensembl hg19 (Hinxton)ENSG00000183640 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183640 [Gene_View]  chr21:30812697-30813252 [Contig_View]  KRTAP8-1 [Vega]
ICGC DataPortalENSG00000183640
TCGA cBioPortalKRTAP8-1
AceView (NCBI)KRTAP8-1
Genatlas (Paris)KRTAP8-1
WikiGenes337879
SOURCE (Princeton)KRTAP8-1
Genetics Home Reference (NIH)KRTAP8-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP8-1  -     chr21:30812697-30813252 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP8-1  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP8-1 - 21q22.11 [CytoView hg19]  KRTAP8-1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP8-1 [Mapview hg19]  KRTAP8-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096961 AJ457064 BC130397 BC133033
RefSeq transcript (Entrez)NM_175857
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP8-1
Cluster EST : UnigeneHs.407655 [ NCBI ]
CGAP (NCI)Hs.407655
Alternative Splicing GalleryENSG00000183640
Gene ExpressionKRTAP8-1 [ NCBI-GEO ]   KRTAP8-1 [ EBI - ARRAY_EXPRESS ]   KRTAP8-1 [ SEEK ]   KRTAP8-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP8-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337879
GTEX Portal (Tissue expression)KRTAP8-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUC2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUC2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUC2
Splice isoforms : SwissVarQ8IUC2
PhosPhoSitePlusQ8IUC2
Domains : Interpro (EBI)KRTAP_type6/8/16/19/20/21   
Domain families : Pfam (Sanger)KRTAP (PF11759)   
Domain families : Pfam (NCBI)pfam11759   
Conserved Domain (NCBI)KRTAP8-1
DMDM Disease mutations337879
Blocks (Seattle)KRTAP8-1
SuperfamilyQ8IUC2
Human Protein AtlasENSG00000183640
Peptide AtlasQ8IUC2
HPRD11221
IPIIPI00216712   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUC2
IntAct (EBI)Q8IUC2
FunCoupENSG00000183640
BioGRIDKRTAP8-1
STRING (EMBL)KRTAP8-1
ZODIACKRTAP8-1
Ontologies - Pathways
QuickGOQ8IUC2
Ontology : AmiGOprotein binding  cytosol  intermediate filament  keratinization  
Ontology : EGO-EBIprotein binding  cytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP8-1
Atlas of Cancer Signalling NetworkKRTAP8-1
Wikipedia pathwaysKRTAP8-1
Orthology - Evolution
OrthoDB337879
GeneTree (enSembl)ENSG00000183640
Phylogenetic Trees/Animal Genes : TreeFamKRTAP8-1
HOVERGENQ8IUC2
HOGENOMQ8IUC2
Homologs : HomoloGeneKRTAP8-1
Homology/Alignments : Family Browser (UCSC)KRTAP8-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP8-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP8-1
dbVarKRTAP8-1
ClinVarKRTAP8-1
1000_GenomesKRTAP8-1 
Exome Variant ServerKRTAP8-1
ExAC (Exome Aggregation Consortium)KRTAP8-1 (select the gene name)
Genetic variants : HAPMAP337879
Genomic Variants (DGV)KRTAP8-1 [DGVbeta]
DECIPHERKRTAP8-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP8-1 
Mutations
ICGC Data PortalKRTAP8-1 
TCGA Data PortalKRTAP8-1 
Broad Tumor PortalKRTAP8-1
OASIS PortalKRTAP8-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP8-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP8-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP8-1
DgiDB (Drug Gene Interaction Database)KRTAP8-1
DoCM (Curated mutations)KRTAP8-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP8-1 (select a term)
intoGenKRTAP8-1
Cancer3DKRTAP8-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP8-1
Genetic Testing Registry KRTAP8-1
NextProtQ8IUC2 [Medical]
TSGene337879
GENETestsKRTAP8-1
Target ValidationKRTAP8-1
Huge Navigator KRTAP8-1 [HugePedia]
snp3D : Map Gene to Disease337879
BioCentury BCIQKRTAP8-1
ClinGenKRTAP8-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337879
Chemical/Pharm GKB GenePA134918132
Clinical trialKRTAP8-1
Miscellaneous
canSAR (ICR)KRTAP8-1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP8-1
EVEXKRTAP8-1
GoPubMedKRTAP8-1
iHOPKRTAP8-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:12:25 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.