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KRTAP9-1 (keratin associated protein 9-1)

Identity

Alias_namesKRTAP9L3
keratin associated protein 9-like 3
Alias_symbol (synonym)KAP9.1
Other alias
HGNC (Hugo) KRTAP9-1
LocusID (NCBI) 728318
Atlas_Id 65136
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41189887 and ends at 41190639 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP9-1   18912
Cards
Entrez_Gene (NCBI)KRTAP9-1  728318  keratin associated protein 9-1
AliasesKAP9.1; KRTAP9L3
GeneCards (Weizmann)KRTAP9-1
Ensembl hg19 (Hinxton)ENSG00000240542 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240542 [Gene_View]  chr17:41189887-41190639 [Contig_View]  KRTAP9-1 [Vega]
ICGC DataPortalENSG00000240542
TCGA cBioPortalKRTAP9-1
AceView (NCBI)KRTAP9-1
Genatlas (Paris)KRTAP9-1
WikiGenes728318
SOURCE (Princeton)KRTAP9-1
Genetics Home Reference (NIH)KRTAP9-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP9-1  -     chr17:41189887-41190639 +  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP9-1  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP9-1 - 17q21.2 [CytoView hg19]  KRTAP9-1 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP9-1 [Mapview hg19]  KRTAP9-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001190460
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP9-1
Cluster EST : UnigeneHs.727478 [ NCBI ]
CGAP (NCI)Hs.727478
Alternative Splicing GalleryENSG00000240542
Gene ExpressionKRTAP9-1 [ NCBI-GEO ]   KRTAP9-1 [ EBI - ARRAY_EXPRESS ]   KRTAP9-1 [ SEEK ]   KRTAP9-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP9-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728318
GTEX Portal (Tissue expression)KRTAP9-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MXZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MXZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MXZ3
Splice isoforms : SwissVarA8MXZ3
PhosPhoSitePlusA8MXZ3
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP9-1
DMDM Disease mutations728318
Blocks (Seattle)KRTAP9-1
SuperfamilyA8MXZ3
Human Protein AtlasENSG00000240542
Peptide AtlasA8MXZ3
IPIIPI00743666   IPI00186604   
Protein Interaction databases
DIP (DOE-UCLA)A8MXZ3
IntAct (EBI)A8MXZ3
FunCoupENSG00000240542
BioGRIDKRTAP9-1
STRING (EMBL)KRTAP9-1
ZODIACKRTAP9-1
Ontologies - Pathways
QuickGOA8MXZ3
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP9-1
Atlas of Cancer Signalling NetworkKRTAP9-1
Wikipedia pathwaysKRTAP9-1
Orthology - Evolution
OrthoDB728318
GeneTree (enSembl)ENSG00000240542
Phylogenetic Trees/Animal Genes : TreeFamKRTAP9-1
HOVERGENA8MXZ3
HOGENOMA8MXZ3
Homologs : HomoloGeneKRTAP9-1
Homology/Alignments : Family Browser (UCSC)KRTAP9-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP9-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP9-1
dbVarKRTAP9-1
ClinVarKRTAP9-1
1000_GenomesKRTAP9-1 
Exome Variant ServerKRTAP9-1
ExAC (Exome Aggregation Consortium)KRTAP9-1 (select the gene name)
Genetic variants : HAPMAP728318
Genomic Variants (DGV)KRTAP9-1 [DGVbeta]
DECIPHERKRTAP9-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP9-1 
Mutations
ICGC Data PortalKRTAP9-1 
TCGA Data PortalKRTAP9-1 
Broad Tumor PortalKRTAP9-1
OASIS PortalKRTAP9-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP9-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP9-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP9-1
DgiDB (Drug Gene Interaction Database)KRTAP9-1
DoCM (Curated mutations)KRTAP9-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP9-1 (select a term)
intoGenKRTAP9-1
Cancer3DKRTAP9-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP9-1
Genetic Testing Registry KRTAP9-1
NextProtA8MXZ3 [Medical]
TSGene728318
GENETestsKRTAP9-1
Target ValidationKRTAP9-1
Huge Navigator KRTAP9-1 [HugePedia]
snp3D : Map Gene to Disease728318
BioCentury BCIQKRTAP9-1
ClinGenKRTAP9-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728318
Chemical/Pharm GKB GenePA134939475
Clinical trialKRTAP9-1
Miscellaneous
canSAR (ICR)KRTAP9-1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP9-1
EVEXKRTAP9-1
GoPubMedKRTAP9-1
iHOPKRTAP9-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:24 CEST 2017

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