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KRTAP9-2 (keratin associated protein 9-2)

Identity

Alias_symbol (synonym)KAP9.2
Other aliasKRTAP9.2
HGNC (Hugo) KRTAP9-2
LocusID (NCBI) 83899
Atlas_Id 65137
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41226648 and ends at 41227652 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP9-2   16926
Cards
Entrez_Gene (NCBI)KRTAP9-2  83899  keratin associated protein 9-2
AliasesKAP9.2; KRTAP9.2
GeneCards (Weizmann)KRTAP9-2
Ensembl hg19 (Hinxton)ENSG00000239886 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239886 [Gene_View]  chr17:41226648-41227652 [Contig_View]  KRTAP9-2 [Vega]
ICGC DataPortalENSG00000239886
TCGA cBioPortalKRTAP9-2
AceView (NCBI)KRTAP9-2
Genatlas (Paris)KRTAP9-2
WikiGenes83899
SOURCE (Princeton)KRTAP9-2
Genetics Home Reference (NIH)KRTAP9-2
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP9-2  -     chr17:41226648-41227652 +  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP9-2  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP9-2 - 17q21.2 [CytoView hg19]  KRTAP9-2 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP9-2 [Mapview hg19]  KRTAP9-2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406946 BC069560 BC110619 BC117287
RefSeq transcript (Entrez)NM_031961
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP9-2
Cluster EST : UnigeneHs.307013 [ NCBI ]
CGAP (NCI)Hs.307013
Alternative Splicing GalleryENSG00000239886
Gene ExpressionKRTAP9-2 [ NCBI-GEO ]   KRTAP9-2 [ EBI - ARRAY_EXPRESS ]   KRTAP9-2 [ SEEK ]   KRTAP9-2 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP9-2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83899
GTEX Portal (Tissue expression)KRTAP9-2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYQ4
Splice isoforms : SwissVarQ9BYQ4
PhosPhoSitePlusQ9BYQ4
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP9-2
DMDM Disease mutations83899
Blocks (Seattle)KRTAP9-2
SuperfamilyQ9BYQ4
Human Protein AtlasENSG00000239886
Peptide AtlasQ9BYQ4
HPRD13949
IPIIPI00260816   IPI01012110   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYQ4
IntAct (EBI)Q9BYQ4
FunCoupENSG00000239886
BioGRIDKRTAP9-2
STRING (EMBL)KRTAP9-2
ZODIACKRTAP9-2
Ontologies - Pathways
QuickGOQ9BYQ4
Ontology : AmiGOprotein binding  cytosol  keratinization  identical protein binding  keratin filament  
Ontology : EGO-EBIprotein binding  cytosol  keratinization  identical protein binding  keratin filament  
NDEx NetworkKRTAP9-2
Atlas of Cancer Signalling NetworkKRTAP9-2
Wikipedia pathwaysKRTAP9-2
Orthology - Evolution
OrthoDB83899
GeneTree (enSembl)ENSG00000239886
Phylogenetic Trees/Animal Genes : TreeFamKRTAP9-2
HOVERGENQ9BYQ4
HOGENOMQ9BYQ4
Homologs : HomoloGeneKRTAP9-2
Homology/Alignments : Family Browser (UCSC)KRTAP9-2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP9-2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP9-2
dbVarKRTAP9-2
ClinVarKRTAP9-2
1000_GenomesKRTAP9-2 
Exome Variant ServerKRTAP9-2
ExAC (Exome Aggregation Consortium)KRTAP9-2 (select the gene name)
Genetic variants : HAPMAP83899
Genomic Variants (DGV)KRTAP9-2 [DGVbeta]
DECIPHERKRTAP9-2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP9-2 
Mutations
ICGC Data PortalKRTAP9-2 
TCGA Data PortalKRTAP9-2 
Broad Tumor PortalKRTAP9-2
OASIS PortalKRTAP9-2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP9-2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP9-2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP9-2
DgiDB (Drug Gene Interaction Database)KRTAP9-2
DoCM (Curated mutations)KRTAP9-2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP9-2 (select a term)
intoGenKRTAP9-2
Cancer3DKRTAP9-2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP9-2
Genetic Testing Registry KRTAP9-2
NextProtQ9BYQ4 [Medical]
TSGene83899
GENETestsKRTAP9-2
Target ValidationKRTAP9-2
Huge Navigator KRTAP9-2 [HugePedia]
snp3D : Map Gene to Disease83899
BioCentury BCIQKRTAP9-2
ClinGenKRTAP9-2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83899
Chemical/Pharm GKB GenePA38424
Clinical trialKRTAP9-2
Miscellaneous
canSAR (ICR)KRTAP9-2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP9-2
EVEXKRTAP9-2
GoPubMedKRTAP9-2
iHOPKRTAP9-2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:25 CEST 2017

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