Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP9-3 (keratin associated protein 9-3)

Identity

Alias_symbol (synonym)KAP9.3
Other aliasKRTAP9.3
HGNC (Hugo) KRTAP9-3
LocusID (NCBI) 83900
Atlas_Id 65138
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41232463 and ends at 41233454 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP9-3   16927
Cards
Entrez_Gene (NCBI)KRTAP9-3  83900  keratin associated protein 9-3
AliasesKAP9.3; KRTAP9.3
GeneCards (Weizmann)KRTAP9-3
Ensembl hg19 (Hinxton)ENSG00000204873 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204873 [Gene_View]  chr17:41232463-41233454 [Contig_View]  KRTAP9-3 [Vega]
ICGC DataPortalENSG00000204873
TCGA cBioPortalKRTAP9-3
AceView (NCBI)KRTAP9-3
Genatlas (Paris)KRTAP9-3
WikiGenes83900
SOURCE (Princeton)KRTAP9-3
Genetics Home Reference (NIH)KRTAP9-3
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP9-3  -     chr17:41232463-41233454 +  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP9-3  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP9-3 - 17q21.2 [CytoView hg19]  KRTAP9-3 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP9-3 [Mapview hg19]  KRTAP9-3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406947 BC074918 BC074919
RefSeq transcript (Entrez)NM_031962
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP9-3
Cluster EST : UnigeneHs.307012 [ NCBI ]
CGAP (NCI)Hs.307012
Alternative Splicing GalleryENSG00000204873
Gene ExpressionKRTAP9-3 [ NCBI-GEO ]   KRTAP9-3 [ EBI - ARRAY_EXPRESS ]   KRTAP9-3 [ SEEK ]   KRTAP9-3 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP9-3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83900
GTEX Portal (Tissue expression)KRTAP9-3
Human Protein AtlasENSG00000204873-KRTAP9-3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYQ3
Splice isoforms : SwissVarQ9BYQ3
PhosPhoSitePlusQ9BYQ3
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP9-3
DMDM Disease mutations83900
Blocks (Seattle)KRTAP9-3
SuperfamilyQ9BYQ3
Human Protein Atlas [tissue]ENSG00000204873-KRTAP9-3 [tissue]
Peptide AtlasQ9BYQ3
HPRD13950
IPIIPI00011222   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYQ3
IntAct (EBI)Q9BYQ3
FunCoupENSG00000204873
BioGRIDKRTAP9-3
STRING (EMBL)KRTAP9-3
ZODIACKRTAP9-3
Ontologies - Pathways
QuickGOQ9BYQ3
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP9-3
Atlas of Cancer Signalling NetworkKRTAP9-3
Wikipedia pathwaysKRTAP9-3
Orthology - Evolution
OrthoDB83900
GeneTree (enSembl)ENSG00000204873
Phylogenetic Trees/Animal Genes : TreeFamKRTAP9-3
HOVERGENQ9BYQ3
HOGENOMQ9BYQ3
Homologs : HomoloGeneKRTAP9-3
Homology/Alignments : Family Browser (UCSC)KRTAP9-3
Gene fusions - Rearrangements
Fusion: Tumor Portal KRTAP9-3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP9-3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP9-3
dbVarKRTAP9-3
ClinVarKRTAP9-3
1000_GenomesKRTAP9-3 
Exome Variant ServerKRTAP9-3
ExAC (Exome Aggregation Consortium)ENSG00000204873
GNOMAD BrowserENSG00000204873
Genetic variants : HAPMAP83900
Genomic Variants (DGV)KRTAP9-3 [DGVbeta]
DECIPHERKRTAP9-3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP9-3 
Mutations
ICGC Data PortalKRTAP9-3 
TCGA Data PortalKRTAP9-3 
Broad Tumor PortalKRTAP9-3
OASIS PortalKRTAP9-3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP9-3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP9-3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP9-3
DgiDB (Drug Gene Interaction Database)KRTAP9-3
DoCM (Curated mutations)KRTAP9-3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP9-3 (select a term)
intoGenKRTAP9-3
Cancer3DKRTAP9-3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP9-3
Genetic Testing Registry KRTAP9-3
NextProtQ9BYQ3 [Medical]
TSGene83900
GENETestsKRTAP9-3
Target ValidationKRTAP9-3
Huge Navigator KRTAP9-3 [HugePedia]
snp3D : Map Gene to Disease83900
BioCentury BCIQKRTAP9-3
ClinGenKRTAP9-3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83900
Chemical/Pharm GKB GenePA38425
Clinical trialKRTAP9-3
Miscellaneous
canSAR (ICR)KRTAP9-3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP9-3
EVEXKRTAP9-3
GoPubMedKRTAP9-3
iHOPKRTAP9-3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Nov 9 11:53:15 CET 2017

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