Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP9-4 (keratin associated protein 9-4)

Identity

Alias_symbol (synonym)KAP9.4
Other aliasKRTAP9.4
HGNC (Hugo) KRTAP9-4
LocusID (NCBI) 85280
Atlas_Id 65139
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41249687 and ends at 41250653 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP9-4   18902
Cards
Entrez_Gene (NCBI)KRTAP9-4  85280  keratin associated protein 9-4
AliasesKAP9.4; KRTAP9.4
GeneCards (Weizmann)KRTAP9-4
Ensembl hg19 (Hinxton)ENSG00000241595 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241595 [Gene_View]  chr17:41249687-41250653 [Contig_View]  KRTAP9-4 [Vega]
ICGC DataPortalENSG00000241595
TCGA cBioPortalKRTAP9-4
AceView (NCBI)KRTAP9-4
Genatlas (Paris)KRTAP9-4
WikiGenes85280
SOURCE (Princeton)KRTAP9-4
Genetics Home Reference (NIH)KRTAP9-4
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP9-4  -     chr17:41249687-41250653 +  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP9-4  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP9-4 - 17q21.2 [CytoView hg19]  KRTAP9-4 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP9-4 [Mapview hg19]  KRTAP9-4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406948 BC121094
RefSeq transcript (Entrez)NM_033191
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP9-4
Cluster EST : UnigeneHs.528700 [ NCBI ]
CGAP (NCI)Hs.528700
Alternative Splicing GalleryENSG00000241595
Gene ExpressionKRTAP9-4 [ NCBI-GEO ]   KRTAP9-4 [ EBI - ARRAY_EXPRESS ]   KRTAP9-4 [ SEEK ]   KRTAP9-4 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP9-4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85280
GTEX Portal (Tissue expression)KRTAP9-4
Human Protein AtlasENSG00000241595-KRTAP9-4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYQ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYQ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYQ2
Splice isoforms : SwissVarQ9BYQ2
PhosPhoSitePlusQ9BYQ2
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP9-4
DMDM Disease mutations85280
Blocks (Seattle)KRTAP9-4
SuperfamilyQ9BYQ2
Human Protein Atlas [tissue]ENSG00000241595-KRTAP9-4 [tissue]
Peptide AtlasQ9BYQ2
HPRD13951
IPIIPI00260814   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYQ2
IntAct (EBI)Q9BYQ2
FunCoupENSG00000241595
BioGRIDKRTAP9-4
STRING (EMBL)KRTAP9-4
ZODIACKRTAP9-4
Ontologies - Pathways
QuickGOQ9BYQ2
Ontology : AmiGOprotein binding  cytosol  keratinization  keratin filament  
Ontology : EGO-EBIprotein binding  cytosol  keratinization  keratin filament  
NDEx NetworkKRTAP9-4
Atlas of Cancer Signalling NetworkKRTAP9-4
Wikipedia pathwaysKRTAP9-4
Orthology - Evolution
OrthoDB85280
GeneTree (enSembl)ENSG00000241595
Phylogenetic Trees/Animal Genes : TreeFamKRTAP9-4
HOVERGENQ9BYQ2
HOGENOMQ9BYQ2
Homologs : HomoloGeneKRTAP9-4
Homology/Alignments : Family Browser (UCSC)KRTAP9-4
Gene fusions - Rearrangements
Tumor Fusion PortalKRTAP9-4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP9-4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP9-4
dbVarKRTAP9-4
ClinVarKRTAP9-4
1000_GenomesKRTAP9-4 
Exome Variant ServerKRTAP9-4
ExAC (Exome Aggregation Consortium)ENSG00000241595
GNOMAD BrowserENSG00000241595
Genetic variants : HAPMAP85280
Genomic Variants (DGV)KRTAP9-4 [DGVbeta]
DECIPHERKRTAP9-4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP9-4 
Mutations
ICGC Data PortalKRTAP9-4 
TCGA Data PortalKRTAP9-4 
Broad Tumor PortalKRTAP9-4
OASIS PortalKRTAP9-4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP9-4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP9-4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP9-4
DgiDB (Drug Gene Interaction Database)KRTAP9-4
DoCM (Curated mutations)KRTAP9-4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP9-4 (select a term)
intoGenKRTAP9-4
Cancer3DKRTAP9-4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETKRTAP9-4
MedgenKRTAP9-4
Genetic Testing Registry KRTAP9-4
NextProtQ9BYQ2 [Medical]
TSGene85280
GENETestsKRTAP9-4
Target ValidationKRTAP9-4
Huge Navigator KRTAP9-4 [HugePedia]
snp3D : Map Gene to Disease85280
BioCentury BCIQKRTAP9-4
ClinGenKRTAP9-4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85280
Chemical/Pharm GKB GenePA38750
Clinical trialKRTAP9-4
Miscellaneous
canSAR (ICR)KRTAP9-4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP9-4
EVEXKRTAP9-4
GoPubMedKRTAP9-4
iHOPKRTAP9-4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:35:42 CET 2017

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