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KRTAP9-6 (keratin associated protein 9-6)

Identity

Alias_namesKRTAP9L2
keratin associated protein 9-like 2
Alias_symbol (synonym)KAP9.6
Other aliasKRTAP9.6
HGNC (Hugo) KRTAP9-6
LocusID (NCBI) 100507608
Atlas_Id 65140
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41265378 and ends at 41265860 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP9-6   18914
Cards
Entrez_Gene (NCBI)KRTAP9-6  100507608  keratin associated protein 9-6
AliasesKAP9.6; KRTAP9.6; KRTAP9L2
GeneCards (Weizmann)KRTAP9-6
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:41265378-41265860 [Contig_View]  KRTAP9-6 [Vega]
TCGA cBioPortalKRTAP9-6
AceView (NCBI)KRTAP9-6
Genatlas (Paris)KRTAP9-6
WikiGenes100507608
SOURCE (Princeton)KRTAP9-6
Genetics Home Reference (NIH)KRTAP9-6
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP9-6  -     chr17:41265378-41265860 +  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP9-6  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP9-6 - 17q21.2 [CytoView hg19]  KRTAP9-6 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP9-6 [Mapview hg19]  KRTAP9-6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001277331
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP9-6
Gene ExpressionKRTAP9-6 [ NCBI-GEO ]   KRTAP9-6 [ EBI - ARRAY_EXPRESS ]   KRTAP9-6 [ SEEK ]   KRTAP9-6 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP9-6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507608
GTEX Portal (Tissue expression)KRTAP9-6
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MVA2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MVA2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MVA2
Splice isoforms : SwissVarA8MVA2
PhosPhoSitePlusA8MVA2
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP9-6
DMDM Disease mutations100507608
Blocks (Seattle)KRTAP9-6
SuperfamilyA8MVA2
Peptide AtlasA8MVA2
IPIIPI00787862   
Protein Interaction databases
DIP (DOE-UCLA)A8MVA2
IntAct (EBI)A8MVA2
BioGRIDKRTAP9-6
STRING (EMBL)KRTAP9-6
ZODIACKRTAP9-6
Ontologies - Pathways
QuickGOA8MVA2
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP9-6
Atlas of Cancer Signalling NetworkKRTAP9-6
Wikipedia pathwaysKRTAP9-6
Orthology - Evolution
OrthoDB100507608
Phylogenetic Trees/Animal Genes : TreeFamKRTAP9-6
HOVERGENA8MVA2
HOGENOMA8MVA2
Homologs : HomoloGeneKRTAP9-6
Homology/Alignments : Family Browser (UCSC)KRTAP9-6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP9-6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP9-6
dbVarKRTAP9-6
ClinVarKRTAP9-6
1000_GenomesKRTAP9-6 
Exome Variant ServerKRTAP9-6
ExAC (Exome Aggregation Consortium)KRTAP9-6 (select the gene name)
Genetic variants : HAPMAP100507608
Genomic Variants (DGV)KRTAP9-6 [DGVbeta]
DECIPHERKRTAP9-6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP9-6 
Mutations
ICGC Data PortalKRTAP9-6 
TCGA Data PortalKRTAP9-6 
Broad Tumor PortalKRTAP9-6
OASIS PortalKRTAP9-6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKRTAP9-6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP9-6
DgiDB (Drug Gene Interaction Database)KRTAP9-6
DoCM (Curated mutations)KRTAP9-6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP9-6 (select a term)
intoGenKRTAP9-6
Cancer3DKRTAP9-6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP9-6
Genetic Testing Registry KRTAP9-6
NextProtA8MVA2 [Medical]
TSGene100507608
GENETestsKRTAP9-6
Target ValidationKRTAP9-6
Huge Navigator KRTAP9-6 [HugePedia]
snp3D : Map Gene to Disease100507608
BioCentury BCIQKRTAP9-6
ClinGenKRTAP9-6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507608
Chemical/Pharm GKB GenePA38761
Clinical trialKRTAP9-6
Miscellaneous
canSAR (ICR)KRTAP9-6 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP9-6
EVEXKRTAP9-6
GoPubMedKRTAP9-6
iHOPKRTAP9-6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:25 CEST 2017

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