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KRTAP9-8 (keratin associated protein 9-8)

Identity

Alias_symbol (synonym)KAP9.8
Other aliasKRTAP9.8
HGNC (Hugo) KRTAP9-8
LocusID (NCBI) 83901
Atlas_Id 65142
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41238018 and ends at 41239004 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP9-8   17231
Cards
Entrez_Gene (NCBI)KRTAP9-8  83901  keratin associated protein 9-8
AliasesKAP9.8; KRTAP9.8
GeneCards (Weizmann)KRTAP9-8
Ensembl hg19 (Hinxton)ENSG00000187272 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187272 [Gene_View]  chr17:41238018-41239004 [Contig_View]  KRTAP9-8 [Vega]
ICGC DataPortalENSG00000187272
TCGA cBioPortalKRTAP9-8
AceView (NCBI)KRTAP9-8
Genatlas (Paris)KRTAP9-8
WikiGenes83901
SOURCE (Princeton)KRTAP9-8
Genetics Home Reference (NIH)KRTAP9-8
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP9-8  -     chr17:41238018-41239004 +  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP9-8  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP9-8 - 17q21.2 [CytoView hg19]  KRTAP9-8 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP9-8 [Mapview hg19]  KRTAP9-8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406950 BC074981 BC074982
RefSeq transcript (Entrez)NM_031963
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP9-8
Cluster EST : UnigeneHs.307011 [ NCBI ]
CGAP (NCI)Hs.307011
Alternative Splicing GalleryENSG00000187272
Gene ExpressionKRTAP9-8 [ NCBI-GEO ]   KRTAP9-8 [ EBI - ARRAY_EXPRESS ]   KRTAP9-8 [ SEEK ]   KRTAP9-8 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP9-8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83901
GTEX Portal (Tissue expression)KRTAP9-8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYQ0
Splice isoforms : SwissVarQ9BYQ0
PhosPhoSitePlusQ9BYQ0
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP9-8
DMDM Disease mutations83901
Blocks (Seattle)KRTAP9-8
SuperfamilyQ9BYQ0
Human Protein AtlasENSG00000187272
Peptide AtlasQ9BYQ0
IPIIPI00377268   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYQ0
IntAct (EBI)Q9BYQ0
FunCoupENSG00000187272
BioGRIDKRTAP9-8
STRING (EMBL)KRTAP9-8
ZODIACKRTAP9-8
Ontologies - Pathways
QuickGOQ9BYQ0
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP9-8
Atlas of Cancer Signalling NetworkKRTAP9-8
Wikipedia pathwaysKRTAP9-8
Orthology - Evolution
OrthoDB83901
GeneTree (enSembl)ENSG00000187272
Phylogenetic Trees/Animal Genes : TreeFamKRTAP9-8
HOVERGENQ9BYQ0
HOGENOMQ9BYQ0
Homologs : HomoloGeneKRTAP9-8
Homology/Alignments : Family Browser (UCSC)KRTAP9-8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP9-8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP9-8
dbVarKRTAP9-8
ClinVarKRTAP9-8
1000_GenomesKRTAP9-8 
Exome Variant ServerKRTAP9-8
ExAC (Exome Aggregation Consortium)KRTAP9-8 (select the gene name)
Genetic variants : HAPMAP83901
Genomic Variants (DGV)KRTAP9-8 [DGVbeta]
DECIPHERKRTAP9-8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP9-8 
Mutations
ICGC Data PortalKRTAP9-8 
TCGA Data PortalKRTAP9-8 
Broad Tumor PortalKRTAP9-8
OASIS PortalKRTAP9-8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP9-8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP9-8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP9-8
DgiDB (Drug Gene Interaction Database)KRTAP9-8
DoCM (Curated mutations)KRTAP9-8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP9-8 (select a term)
intoGenKRTAP9-8
Cancer3DKRTAP9-8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP9-8
Genetic Testing Registry KRTAP9-8
NextProtQ9BYQ0 [Medical]
TSGene83901
GENETestsKRTAP9-8
Target ValidationKRTAP9-8
Huge Navigator KRTAP9-8 [HugePedia]
snp3D : Map Gene to Disease83901
BioCentury BCIQKRTAP9-8
ClinGenKRTAP9-8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83901
Chemical/Pharm GKB GenePA38443
Clinical trialKRTAP9-8
Miscellaneous
canSAR (ICR)KRTAP9-8 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP9-8
EVEXKRTAP9-8
GoPubMedKRTAP9-8
iHOPKRTAP9-8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:26 CEST 2017

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