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KRTAP9-9 (keratin associated protein 9-9)

Identity

Alias_namesKRTAP9-5
keratin associated protein 9-5
Alias_symbol (synonym)KAP9.9
KAP9.5
Other aliasKRTAP9.9
HGNC (Hugo) KRTAP9-9
LocusID (NCBI) 81870
Atlas_Id 65143
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41232500 and ends at 41256364 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP9-9   16773
Cards
Entrez_Gene (NCBI)KRTAP9-9  81870  keratin associated protein 9-9
AliasesKAP9.5; KAP9.9; KRTAP9-5; KRTAP9.9
GeneCards (Weizmann)KRTAP9-9
Ensembl hg19 (Hinxton)ENSG00000198083 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198083 [Gene_View]  chr17:41232500-41256364 [Contig_View]  KRTAP9-9 [Vega]
ICGC DataPortalENSG00000198083
TCGA cBioPortalKRTAP9-9
AceView (NCBI)KRTAP9-9
Genatlas (Paris)KRTAP9-9
WikiGenes81870
SOURCE (Princeton)KRTAP9-9
Genetics Home Reference (NIH)KRTAP9-9
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP9-9  -     chr17:41232500-41256364 +  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP9-9  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP9-9 - 17q21.2 [CytoView hg19]  KRTAP9-9 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP9-9 [Mapview hg19]  KRTAP9-9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406949 AJ406951
RefSeq transcript (Entrez)NM_001318227 NM_030975
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP9-9
Cluster EST : UnigeneHs.722077 [ NCBI ]
CGAP (NCI)Hs.722077
Alternative Splicing GalleryENSG00000198083
Gene ExpressionKRTAP9-9 [ NCBI-GEO ]   KRTAP9-9 [ EBI - ARRAY_EXPRESS ]   KRTAP9-9 [ SEEK ]   KRTAP9-9 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP9-9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81870
GTEX Portal (Tissue expression)KRTAP9-9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYP9
Splice isoforms : SwissVarQ9BYP9
PhosPhoSitePlusQ9BYP9
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP9-9
DMDM Disease mutations81870
Blocks (Seattle)KRTAP9-9
SuperfamilyQ9BYP9
Human Protein AtlasENSG00000198083
Peptide AtlasQ9BYP9
IPIIPI00829832   IPI00788020   IPI00913984   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYP9
IntAct (EBI)Q9BYP9
FunCoupENSG00000198083
BioGRIDKRTAP9-9
STRING (EMBL)KRTAP9-9
ZODIACKRTAP9-9
Ontologies - Pathways
QuickGOQ9BYP9
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP9-9
Atlas of Cancer Signalling NetworkKRTAP9-9
Wikipedia pathwaysKRTAP9-9
Orthology - Evolution
OrthoDB81870
GeneTree (enSembl)ENSG00000198083
Phylogenetic Trees/Animal Genes : TreeFamKRTAP9-9
HOVERGENQ9BYP9
HOGENOMQ9BYP9
Homologs : HomoloGeneKRTAP9-9
Homology/Alignments : Family Browser (UCSC)KRTAP9-9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP9-9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP9-9
dbVarKRTAP9-9
ClinVarKRTAP9-9
1000_GenomesKRTAP9-9 
Exome Variant ServerKRTAP9-9
ExAC (Exome Aggregation Consortium)KRTAP9-9 (select the gene name)
Genetic variants : HAPMAP81870
Genomic Variants (DGV)KRTAP9-9 [DGVbeta]
DECIPHERKRTAP9-9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP9-9 
Mutations
ICGC Data PortalKRTAP9-9 
TCGA Data PortalKRTAP9-9 
Broad Tumor PortalKRTAP9-9
OASIS PortalKRTAP9-9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP9-9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP9-9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP9-9
DgiDB (Drug Gene Interaction Database)KRTAP9-9
DoCM (Curated mutations)KRTAP9-9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP9-9 (select a term)
intoGenKRTAP9-9
Cancer3DKRTAP9-9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP9-9
Genetic Testing Registry KRTAP9-9
NextProtQ9BYP9 [Medical]
TSGene81870
GENETestsKRTAP9-9
Target ValidationKRTAP9-9
Huge Navigator KRTAP9-9 [HugePedia]
snp3D : Map Gene to Disease81870
BioCentury BCIQKRTAP9-9
ClinGenKRTAP9-9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81870
Chemical/Pharm GKB GenePA38413
Clinical trialKRTAP9-9
Miscellaneous
canSAR (ICR)KRTAP9-9 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP9-9
EVEXKRTAP9-9
GoPubMedKRTAP9-9
iHOPKRTAP9-9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:26 CEST 2017

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