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KRTCAP2 (keratinocyte associated protein 2)

Identity

Alias_symbol (synonym)KCP2
Other alias
HGNC (Hugo) KRTCAP2
LocusID (NCBI) 200185
Atlas_Id 65144
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 155169408 and ends at 155173328 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATF6B (6p21.33) / KRTCAP2 (1q22)KRTCAP2 (1q22) / PIGM (1q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTCAP2   28942
Cards
Entrez_Gene (NCBI)KRTCAP2  200185  keratinocyte associated protein 2
AliasesKCP2
GeneCards (Weizmann)KRTCAP2
Ensembl hg19 (Hinxton)ENSG00000163463 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163463 [Gene_View]  chr1:155169408-155173328 [Contig_View]  KRTCAP2 [Vega]
ICGC DataPortalENSG00000163463
TCGA cBioPortalKRTCAP2
AceView (NCBI)KRTCAP2
Genatlas (Paris)KRTCAP2
WikiGenes200185
SOURCE (Princeton)KRTCAP2
Genetics Home Reference (NIH)KRTCAP2
Genomic and cartography
GoldenPath hg38 (UCSC)KRTCAP2  -     chr1:155169408-155173328 -  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTCAP2  -     1q22   [Description]    (hg19-Feb_2009)
EnsemblKRTCAP2 - 1q22 [CytoView hg19]  KRTCAP2 - 1q22 [CytoView hg38]
Mapping of homologs : NCBIKRTCAP2 [Mapview hg19]  KRTCAP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024167 AK311907 AY157577 BC029806 BC048205
RefSeq transcript (Entrez)NM_173852
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTCAP2
Cluster EST : UnigeneHs.704676 [ NCBI ]
CGAP (NCI)Hs.704676
Alternative Splicing GalleryENSG00000163463
Gene ExpressionKRTCAP2 [ NCBI-GEO ]   KRTCAP2 [ EBI - ARRAY_EXPRESS ]   KRTCAP2 [ SEEK ]   KRTCAP2 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTCAP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200185
GTEX Portal (Tissue expression)KRTCAP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6L1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6L1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6L1
Splice isoforms : SwissVarQ8N6L1
PhosPhoSitePlusQ8N6L1
Domains : Interpro (EBI)KRTCAP2   
Domain families : Pfam (Sanger)Keratin_assoc (PF09775)   
Domain families : Pfam (NCBI)pfam09775   
Conserved Domain (NCBI)KRTCAP2
DMDM Disease mutations200185
Blocks (Seattle)KRTCAP2
SuperfamilyQ8N6L1
Human Protein AtlasENSG00000163463
Peptide AtlasQ8N6L1
HPRD17253
IPIIPI00167030   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6L1
IntAct (EBI)Q8N6L1
FunCoupENSG00000163463
BioGRIDKRTCAP2
STRING (EMBL)KRTCAP2
ZODIACKRTCAP2
Ontologies - Pathways
QuickGOQ8N6L1
Ontology : AmiGOmolecular_function  cellular_component  biological_process  oligosaccharyltransferase complex  integral component of membrane  protein N-linked glycosylation via arginine  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  oligosaccharyltransferase complex  integral component of membrane  protein N-linked glycosylation via arginine  
NDEx NetworkKRTCAP2
Atlas of Cancer Signalling NetworkKRTCAP2
Wikipedia pathwaysKRTCAP2
Orthology - Evolution
OrthoDB200185
GeneTree (enSembl)ENSG00000163463
Phylogenetic Trees/Animal Genes : TreeFamKRTCAP2
HOVERGENQ8N6L1
HOGENOMQ8N6L1
Homologs : HomoloGeneKRTCAP2
Homology/Alignments : Family Browser (UCSC)KRTCAP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTCAP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTCAP2
dbVarKRTCAP2
ClinVarKRTCAP2
1000_GenomesKRTCAP2 
Exome Variant ServerKRTCAP2
ExAC (Exome Aggregation Consortium)KRTCAP2 (select the gene name)
Genetic variants : HAPMAP200185
Genomic Variants (DGV)KRTCAP2 [DGVbeta]
DECIPHERKRTCAP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTCAP2 
Mutations
ICGC Data PortalKRTCAP2 
TCGA Data PortalKRTCAP2 
Broad Tumor PortalKRTCAP2
OASIS PortalKRTCAP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTCAP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTCAP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTCAP2
DgiDB (Drug Gene Interaction Database)KRTCAP2
DoCM (Curated mutations)KRTCAP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTCAP2 (select a term)
intoGenKRTCAP2
Cancer3DKRTCAP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTCAP2
Genetic Testing Registry KRTCAP2
NextProtQ8N6L1 [Medical]
TSGene200185
GENETestsKRTCAP2
Target ValidationKRTCAP2
Huge Navigator KRTCAP2 [HugePedia]
snp3D : Map Gene to Disease200185
BioCentury BCIQKRTCAP2
ClinGenKRTCAP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200185
Chemical/Pharm GKB GenePA134967679
Clinical trialKRTCAP2
Miscellaneous
canSAR (ICR)KRTCAP2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTCAP2
EVEXKRTCAP2
GoPubMedKRTCAP2
iHOPKRTCAP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:26 CEST 2017

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