Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTCAP3 (keratinocyte associated protein 3)

Identity

Alias_symbol (synonym)KCP3
Other aliasMRV222
PRO9898
HGNC (Hugo) KRTCAP3
LocusID (NCBI) 200634
Atlas_Id 65145
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27665233 and ends at 27669348 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTCAP3   28943
Cards
Entrez_Gene (NCBI)KRTCAP3  200634  keratinocyte associated protein 3
AliasesKCP3; MRV222; PRO9898
GeneCards (Weizmann)KRTCAP3
Ensembl hg19 (Hinxton)ENSG00000157992 [Gene_View]  chr2:27665233-27669348 [Contig_View]  KRTCAP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000157992 [Gene_View]  chr2:27665233-27669348 [Contig_View]  KRTCAP3 [Vega]
ICGC DataPortalENSG00000157992
TCGA cBioPortalKRTCAP3
AceView (NCBI)KRTCAP3
Genatlas (Paris)KRTCAP3
WikiGenes200634
SOURCE (Princeton)KRTCAP3
Genetics Home Reference (NIH)KRTCAP3
Genomic and cartography
GoldenPath hg19 (UCSC)KRTCAP3  -     chr2:27665233-27669348 +  2p23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRTCAP3  -     2p23.3   [Description]    (hg38-Dec_2013)
EnsemblKRTCAP3 - 2p23.3 [CytoView hg19]  KRTCAP3 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIKRTCAP3 [Mapview hg19]  KRTCAP3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY157576 AY358993 BC101687 BC101689 BC143574
RefSeq transcript (Entrez)NM_001168364 NM_173853
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)KRTCAP3
Cluster EST : UnigeneHs.59509 [ NCBI ]
CGAP (NCI)Hs.59509
Alternative Splicing GalleryENSG00000157992
Gene ExpressionKRTCAP3 [ NCBI-GEO ]   KRTCAP3 [ EBI - ARRAY_EXPRESS ]   KRTCAP3 [ SEEK ]   KRTCAP3 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTCAP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200634
GTEX Portal (Tissue expression)KRTCAP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53RY4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53RY4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53RY4
Splice isoforms : SwissVarQ53RY4
PhosPhoSitePlusQ53RY4
Domains : Interpro (EBI)Beta-casein-like   
Domain families : Pfam (Sanger)BCLP (PF12304)   
Domain families : Pfam (NCBI)pfam12304   
Conserved Domain (NCBI)KRTCAP3
DMDM Disease mutations200634
Blocks (Seattle)KRTCAP3
SuperfamilyQ53RY4
Human Protein AtlasENSG00000157992
Peptide AtlasQ53RY4
HPRD17254
IPIIPI00217371   IPI00739522   IPI00892756   IPI00892616   
Protein Interaction databases
DIP (DOE-UCLA)Q53RY4
IntAct (EBI)Q53RY4
FunCoupENSG00000157992
BioGRIDKRTCAP3
STRING (EMBL)KRTCAP3
ZODIACKRTCAP3
Ontologies - Pathways
QuickGOQ53RY4
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkKRTCAP3
Atlas of Cancer Signalling NetworkKRTCAP3
Wikipedia pathwaysKRTCAP3
Orthology - Evolution
OrthoDB200634
GeneTree (enSembl)ENSG00000157992
Phylogenetic Trees/Animal Genes : TreeFamKRTCAP3
HOVERGENQ53RY4
HOGENOMQ53RY4
Homologs : HomoloGeneKRTCAP3
Homology/Alignments : Family Browser (UCSC)KRTCAP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTCAP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTCAP3
dbVarKRTCAP3
ClinVarKRTCAP3
1000_GenomesKRTCAP3 
Exome Variant ServerKRTCAP3
ExAC (Exome Aggregation Consortium)KRTCAP3 (select the gene name)
Genetic variants : HAPMAP200634
Genomic Variants (DGV)KRTCAP3 [DGVbeta]
DECIPHER (Syndromes)2:27665233-27669348  ENSG00000157992
CONAN: Copy Number AnalysisKRTCAP3 
Mutations
ICGC Data PortalKRTCAP3 
TCGA Data PortalKRTCAP3 
Broad Tumor PortalKRTCAP3
OASIS PortalKRTCAP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTCAP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTCAP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTCAP3
DgiDB (Drug Gene Interaction Database)KRTCAP3
DoCM (Curated mutations)KRTCAP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTCAP3 (select a term)
intoGenKRTCAP3
Cancer3DKRTCAP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTCAP3
Genetic Testing Registry KRTCAP3
NextProtQ53RY4 [Medical]
TSGene200634
GENETestsKRTCAP3
Huge Navigator KRTCAP3 [HugePedia]
snp3D : Map Gene to Disease200634
BioCentury BCIQKRTCAP3
ClinGenKRTCAP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200634
Chemical/Pharm GKB GenePA134974952
Clinical trialKRTCAP3
Miscellaneous
canSAR (ICR)KRTCAP3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTCAP3
EVEXKRTCAP3
GoPubMedKRTCAP3
iHOPKRTCAP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:10:39 CET 2017

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