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KRTDAP (keratinocyte differentiation associated protein)

Identity

Alias_symbol (synonym)KDAP
UNQ467
Other alias
HGNC (Hugo) KRTDAP
LocusID (NCBI) 388533
Atlas_Id 65146
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 35487324 and ends at 35490531 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DMKN (19q13.12) / KRTDAP (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTDAP   16313
Cards
Entrez_Gene (NCBI)KRTDAP  388533  keratinocyte differentiation associated protein
AliasesKDAP; UNQ467
GeneCards (Weizmann)KRTDAP
Ensembl hg19 (Hinxton)ENSG00000188508 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188508 [Gene_View]  chr19:35487324-35490531 [Contig_View]  KRTDAP [Vega]
ICGC DataPortalENSG00000188508
TCGA cBioPortalKRTDAP
AceView (NCBI)KRTDAP
Genatlas (Paris)KRTDAP
WikiGenes388533
SOURCE (Princeton)KRTDAP
Genetics Home Reference (NIH)KRTDAP
Genomic and cartography
GoldenPath hg38 (UCSC)KRTDAP  -     chr19:35487324-35490531 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTDAP  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblKRTDAP - 19q13.12 [CytoView hg19]  KRTDAP - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIKRTDAP [Mapview hg19]  KRTDAP [Mapview hg38]
OMIM617212   
Gene and transcription
Genbank (Entrez)AI184682 AJ293408 AM392574 AM392667 AM392672
RefSeq transcript (Entrez)NM_001244847 NM_207392
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTDAP
Cluster EST : UnigeneHs.112457 [ NCBI ]
CGAP (NCI)Hs.112457
Alternative Splicing GalleryENSG00000188508
Gene ExpressionKRTDAP [ NCBI-GEO ]   KRTDAP [ EBI - ARRAY_EXPRESS ]   KRTDAP [ SEEK ]   KRTDAP [ MEM ]
Gene Expression Viewer (FireBrowse)KRTDAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388533
GTEX Portal (Tissue expression)KRTDAP
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60985   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60985  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60985
Splice isoforms : SwissVarP60985
PhosPhoSitePlusP60985
Domains : Interpro (EBI)KRTDAP   
Domain families : Pfam (Sanger)KRTDAP (PF15200)   
Domain families : Pfam (NCBI)pfam15200   
Conserved Domain (NCBI)KRTDAP
DMDM Disease mutations388533
Blocks (Seattle)KRTDAP
SuperfamilyP60985
Human Protein AtlasENSG00000188508
Peptide AtlasP60985
HPRD18262
IPIIPI00216626   IPI00885075   
Protein Interaction databases
DIP (DOE-UCLA)P60985
IntAct (EBI)P60985
FunCoupENSG00000188508
BioGRIDKRTDAP
STRING (EMBL)KRTDAP
ZODIACKRTDAP
Ontologies - Pathways
QuickGOP60985
Ontology : AmiGOextracellular region  cell differentiation  
Ontology : EGO-EBIextracellular region  cell differentiation  
NDEx NetworkKRTDAP
Atlas of Cancer Signalling NetworkKRTDAP
Wikipedia pathwaysKRTDAP
Orthology - Evolution
OrthoDB388533
GeneTree (enSembl)ENSG00000188508
Phylogenetic Trees/Animal Genes : TreeFamKRTDAP
HOVERGENP60985
HOGENOMP60985
Homologs : HomoloGeneKRTDAP
Homology/Alignments : Family Browser (UCSC)KRTDAP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTDAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTDAP
dbVarKRTDAP
ClinVarKRTDAP
1000_GenomesKRTDAP 
Exome Variant ServerKRTDAP
ExAC (Exome Aggregation Consortium)KRTDAP (select the gene name)
Genetic variants : HAPMAP388533
Genomic Variants (DGV)KRTDAP [DGVbeta]
DECIPHERKRTDAP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTDAP 
Mutations
ICGC Data PortalKRTDAP 
TCGA Data PortalKRTDAP 
Broad Tumor PortalKRTDAP
OASIS PortalKRTDAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTDAP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTDAP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTDAP
DgiDB (Drug Gene Interaction Database)KRTDAP
DoCM (Curated mutations)KRTDAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTDAP (select a term)
intoGenKRTDAP
Cancer3DKRTDAP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617212   
Orphanet
MedgenKRTDAP
Genetic Testing Registry KRTDAP
NextProtP60985 [Medical]
TSGene388533
GENETestsKRTDAP
Target ValidationKRTDAP
Huge Navigator KRTDAP [HugePedia]
snp3D : Map Gene to Disease388533
BioCentury BCIQKRTDAP
ClinGenKRTDAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388533
Chemical/Pharm GKB GenePA30236
Clinical trialKRTDAP
Miscellaneous
canSAR (ICR)KRTDAP (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTDAP
EVEXKRTDAP
GoPubMedKRTDAP
iHOPKRTDAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:27 CEST 2017

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