Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KTI12 (KTI12 chromatin associated homolog)

Identity

Alias (NCBI)SBBI81
TOT4
HGNC (Hugo) KTI12
HGNC Alias symbTOT4
MGC20419
SBBI81
HGNC Previous nameKTI12 homolog, chromatin associated (S. cerevisiae)
LocusID (NCBI) 112970
Atlas_Id 65147
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 52032103 and ends at 52033810 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)KTI12   25160
Cards
Entrez_Gene (NCBI)KTI12    KTI12 chromatin associated homolog
AliasesSBBI81; TOT4
GeneCards (Weizmann)KTI12
Ensembl hg19 (Hinxton)ENSG00000198841 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198841 [Gene_View]  ENSG00000198841 [Sequence]  chr1:52032103-52033810 [Contig_View]  KTI12 [Vega]
ICGC DataPortalENSG00000198841
TCGA cBioPortalKTI12
AceView (NCBI)KTI12
Genatlas (Paris)KTI12
SOURCE (Princeton)KTI12
Genetics Home Reference (NIH)KTI12
Genomic and cartography
GoldenPath hg38 (UCSC)KTI12  -     chr1:52032103-52033810 -  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KTI12  -     1p32.3   [Description]    (hg19-Feb_2009)
GoldenPathKTI12 - 1p32.3 [CytoView hg19]  KTI12 - 1p32.3 [CytoView hg38]
ImmunoBaseENSG00000198841
Genome Data Viewer NCBIKTI12 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF327348 AK313746 BC012173 BI909162
RefSeq transcript (Entrez)NM_138417
Consensus coding sequences : CCDS (NCBI)KTI12
Gene ExpressionKTI12 [ NCBI-GEO ]   KTI12 [ EBI - ARRAY_EXPRESS ]   KTI12 [ SEEK ]   KTI12 [ MEM ]
Gene Expression Viewer (FireBrowse)KTI12 [ Firebrowse - Broad ]
GenevisibleExpression of KTI12 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112970
GTEX Portal (Tissue expression)KTI12
Human Protein AtlasENSG00000198841-KTI12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EK9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EK9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EK9
PhosPhoSitePlusQ96EK9
Domains : Interpro (EBI)KTI12/PSTK    P-loop_NTPase   
Domain families : Pfam (Sanger)KTI12 (PF08433)   
Domain families : Pfam (NCBI)pfam08433   
Conserved Domain (NCBI)KTI12
SuperfamilyQ96EK9
AlphaFold pdb e-kbQ96EK9   
Human Protein Atlas [tissue]ENSG00000198841-KTI12 [tissue]
HPRD14471
Protein Interaction databases
DIP (DOE-UCLA)Q96EK9
IntAct (EBI)Q96EK9
BioGRIDKTI12
STRING (EMBL)KTI12
ZODIACKTI12
Ontologies - Pathways
QuickGOQ96EK9
Ontology : AmiGOtRNA wobble uridine modification  protein binding  ATP binding  regulation of transcription by RNA polymerase II  elongator holoenzyme complex  
Ontology : EGO-EBItRNA wobble uridine modification  protein binding  ATP binding  regulation of transcription by RNA polymerase II  elongator holoenzyme complex  
NDEx NetworkKTI12
Atlas of Cancer Signalling NetworkKTI12
Wikipedia pathwaysKTI12
Orthology - Evolution
OrthoDB112970
GeneTree (enSembl)ENSG00000198841
Phylogenetic Trees/Animal Genes : TreeFamKTI12
Homologs : HomoloGeneKTI12
Homology/Alignments : Family Browser (UCSC)KTI12
Gene fusions - Rearrangements
Fusion : QuiverKTI12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKTI12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KTI12
dbVarKTI12
ClinVarKTI12
MonarchKTI12
1000_GenomesKTI12 
Exome Variant ServerKTI12
GNOMAD BrowserENSG00000198841
Varsome BrowserKTI12
ACMGKTI12 variants
VarityQ96EK9
Genomic Variants (DGV)KTI12 [DGVbeta]
DECIPHERKTI12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKTI12 
Mutations
ICGC Data PortalKTI12 
TCGA Data PortalKTI12 
Broad Tumor PortalKTI12
OASIS PortalKTI12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKTI12  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DKTI12
Mutations and Diseases : HGMDKTI12
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaKTI12
DgiDB (Drug Gene Interaction Database)KTI12
DoCM (Curated mutations)KTI12
CIViC (Clinical Interpretations of Variants in Cancer)KTI12
Cancer3DKTI12
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETKTI12
MedgenKTI12
Genetic Testing Registry KTI12
NextProtQ96EK9 [Medical]
GENETestsKTI12
Target ValidationKTI12
Huge Navigator KTI12 [HugePedia]
ClinGenKTI12
Clinical trials, drugs, therapy
MyCancerGenomeKTI12
Protein Interactions : CTDKTI12
Pharm GKB GenePA142671571
PharosQ96EK9
Clinical trialKTI12
Miscellaneous
canSAR (ICR)KTI12
HarmonizomeKTI12
DataMed IndexKTI12
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXKTI12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:55:20 CEST 2021

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