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KTN1-AS1 (KTN1 antisense RNA 1)

Identity

Alias_namesC14orf33
chromosome 14 open reading frame 33
KTN1 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)MYCLo-3
Other alias
HGNC (Hugo) KTN1-AS1
LocusID (NCBI) 100129075
Atlas_Id 65148
Location 14q22.3  [Link to chromosome band 14q22]
Location_base_pair Starts at 56042875 and ends at 56046810 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATG14 (14q22.3) / KTN1-AS1 (14q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KTN1-AS1   19842
Cards
Entrez_Gene (NCBI)KTN1-AS1  100129075  KTN1 antisense RNA 1
AliasesC14orf33; MYCLo-3
GeneCards (Weizmann)KTN1-AS1
Ensembl hg19 (Hinxton)ENSG00000186615 [Gene_View]  chr14:56042875-56046810 [Contig_View]  KTN1-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186615 [Gene_View]  chr14:56042875-56046810 [Contig_View]  KTN1-AS1 [Vega]
ICGC DataPortalENSG00000186615
TCGA cBioPortalKTN1-AS1
AceView (NCBI)KTN1-AS1
Genatlas (Paris)KTN1-AS1
WikiGenes100129075
SOURCE (Princeton)KTN1-AS1
Genetics Home Reference (NIH)KTN1-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)KTN1-AS1  -     chr14:56042875-56046810 -  14q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KTN1-AS1  -     14q22.3   [Description]    (hg38-Dec_2013)
EnsemblKTN1-AS1 - 14q22.3 [CytoView hg19]  KTN1-AS1 - 14q22.3 [CytoView hg38]
Mapping of homologs : NCBIKTN1-AS1 [Mapview hg19]  KTN1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124927 BX248296 DA616132 HG506226 HG506227
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)KTN1-AS1
Cluster EST : UnigeneHs.633724 [ NCBI ]
CGAP (NCI)Hs.633724
Alternative Splicing GalleryENSG00000186615
Gene ExpressionKTN1-AS1 [ NCBI-GEO ]   KTN1-AS1 [ EBI - ARRAY_EXPRESS ]   KTN1-AS1 [ SEEK ]   KTN1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)KTN1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129075
GTEX Portal (Tissue expression)KTN1-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SY8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SY8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SY8
Splice isoforms : SwissVarQ86SY8
PhosPhoSitePlusQ86SY8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KTN1-AS1
DMDM Disease mutations100129075
Blocks (Seattle)KTN1-AS1
SuperfamilyQ86SY8
Human Protein AtlasENSG00000186615
Peptide AtlasQ86SY8
IPIIPI00401828   
Protein Interaction databases
DIP (DOE-UCLA)Q86SY8
IntAct (EBI)Q86SY8
FunCoupENSG00000186615
BioGRIDKTN1-AS1
STRING (EMBL)KTN1-AS1
ZODIACKTN1-AS1
Ontologies - Pathways
QuickGOQ86SY8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkKTN1-AS1
Atlas of Cancer Signalling NetworkKTN1-AS1
Wikipedia pathwaysKTN1-AS1
Orthology - Evolution
OrthoDB100129075
GeneTree (enSembl)ENSG00000186615
Phylogenetic Trees/Animal Genes : TreeFamKTN1-AS1
HOVERGENQ86SY8
HOGENOMQ86SY8
Homologs : HomoloGeneKTN1-AS1
Homology/Alignments : Family Browser (UCSC)KTN1-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKTN1-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KTN1-AS1
dbVarKTN1-AS1
ClinVarKTN1-AS1
1000_GenomesKTN1-AS1 
Exome Variant ServerKTN1-AS1
ExAC (Exome Aggregation Consortium)KTN1-AS1 (select the gene name)
Genetic variants : HAPMAP100129075
Genomic Variants (DGV)KTN1-AS1 [DGVbeta]
DECIPHER (Syndromes)14:56042875-56046810  ENSG00000186615
CONAN: Copy Number AnalysisKTN1-AS1 
Mutations
ICGC Data PortalKTN1-AS1 
TCGA Data PortalKTN1-AS1 
Broad Tumor PortalKTN1-AS1
OASIS PortalKTN1-AS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKTN1-AS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKTN1-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KTN1-AS1
DgiDB (Drug Gene Interaction Database)KTN1-AS1
DoCM (Curated mutations)KTN1-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KTN1-AS1 (select a term)
intoGenKTN1-AS1
Cancer3DKTN1-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKTN1-AS1
Genetic Testing Registry KTN1-AS1
NextProtQ86SY8 [Medical]
TSGene100129075
GENETestsKTN1-AS1
Huge Navigator KTN1-AS1 [HugePedia]
snp3D : Map Gene to Disease100129075
BioCentury BCIQKTN1-AS1
ClinGenKTN1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129075
Chemical/Pharm GKB GenePA134921521
Clinical trialKTN1-AS1
Miscellaneous
canSAR (ICR)KTN1-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKTN1-AS1
EVEXKTN1-AS1
GoPubMedKTN1-AS1
iHOPKTN1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:40 CET 2017

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