Atlas of Genetics and Cytogenetics in Oncology and Haematology

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KXD1 (KxDL motif containing 1)

Identity

Alias_namesC19orf50
chromosome 19 open reading frame 50
Alias_symbol (synonym)FLJ25480
MGC2749
KXDL
BORCS4
Other aliasC10orf50
MST096
MSTP096
HGNC (Hugo) KXD1
LocusID (NCBI) 79036
Atlas_Id 65150
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 18557762 and ends at 18569387 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DPYD (1p21.3) / KXD1 (19p13.11)KLHL26 (19p13.11) / KXD1 (19p13.11)KXD1 (19p13.11) / MYH7 (14q11.2)
KXD1 (19p13.11) / UFC1 (1q23.3)LIG3 (17q12) / KXD1 (19p13.11)SLC35F3 (1q42.2) / KXD1 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(17;19)(q12;p13) LIG3/KXD1
t(19;19)(p13;p13) KLHL26/KXD1

External links

Nomenclature
HGNC (Hugo)KXD1   28420
Cards
Entrez_Gene (NCBI)KXD1  79036  KxDL motif containing 1
AliasesBORCS4; C10orf50; C19orf50; KXDL; 
MST096; MSTP096
GeneCards (Weizmann)KXD1
Ensembl hg19 (Hinxton)ENSG00000105700 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105700 [Gene_View]  ENSG00000105700 [Sequence]  chr19:18557762-18569387 [Contig_View]  KXD1 [Vega]
ICGC DataPortalENSG00000105700
TCGA cBioPortalKXD1
AceView (NCBI)KXD1
Genatlas (Paris)KXD1
WikiGenes79036
SOURCE (Princeton)KXD1
Genetics Home Reference (NIH)KXD1
Genomic and cartography
GoldenPath hg38 (UCSC)KXD1  -     chr19:18557762-18569387 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KXD1  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblKXD1 - 19p13.11 [CytoView hg19]  KXD1 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIKXD1 [Mapview hg19]  KXD1 [Mapview hg38]
OMIM615178   
Gene and transcription
Genbank (Entrez)AF173381 AK091145 AK098346 AK125365 BC001080
RefSeq transcript (Entrez)NM_001171948 NM_001171949 NM_024069
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KXD1
Cluster EST : UnigeneHs.714548 [ NCBI ]
CGAP (NCI)Hs.714548
Alternative Splicing GalleryENSG00000105700
Gene ExpressionKXD1 [ NCBI-GEO ]   KXD1 [ EBI - ARRAY_EXPRESS ]   KXD1 [ SEEK ]   KXD1 [ MEM ]
Gene Expression Viewer (FireBrowse)KXD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79036
GTEX Portal (Tissue expression)KXD1
Human Protein AtlasENSG00000105700-KXD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQD3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQD3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQD3
Splice isoforms : SwissVarQ9BQD3
PhosPhoSitePlusQ9BQD3
Domains : Interpro (EBI)Uncharacterised_KxDL   
Domain families : Pfam (Sanger)KxDL (PF10241)   
Domain families : Pfam (NCBI)pfam10241   
Conserved Domain (NCBI)KXD1
DMDM Disease mutations79036
Blocks (Seattle)KXD1
SuperfamilyQ9BQD3
Human Protein Atlas [tissue]ENSG00000105700-KXD1 [tissue]
Peptide AtlasQ9BQD3
HPRD14526
IPIIPI00748498   IPI00385095   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQD3
IntAct (EBI)Q9BQD3
FunCoupENSG00000105700
BioGRIDKXD1
STRING (EMBL)KXD1
ZODIACKXD1
Ontologies - Pathways
QuickGOQ9BQD3
Ontology : AmiGOprotein binding  lysosome  lysosomal membrane  vesicle-mediated transport  BLOC-1 complex  lysosome localization  BORC complex  
Ontology : EGO-EBIprotein binding  lysosome  lysosomal membrane  vesicle-mediated transport  BLOC-1 complex  lysosome localization  BORC complex  
NDEx NetworkKXD1
Atlas of Cancer Signalling NetworkKXD1
Wikipedia pathwaysKXD1
Orthology - Evolution
OrthoDB79036
GeneTree (enSembl)ENSG00000105700
Phylogenetic Trees/Animal Genes : TreeFamKXD1
HOVERGENQ9BQD3
HOGENOMQ9BQD3
Homologs : HomoloGeneKXD1
Homology/Alignments : Family Browser (UCSC)KXD1
Gene fusions - Rearrangements
Fusion : QuiverKXD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKXD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KXD1
dbVarKXD1
ClinVarKXD1
1000_GenomesKXD1 
Exome Variant ServerKXD1
ExAC (Exome Aggregation Consortium)ENSG00000105700
GNOMAD BrowserENSG00000105700
Varsome BrowserKXD1
Genetic variants : HAPMAP79036
Genomic Variants (DGV)KXD1 [DGVbeta]
DECIPHERKXD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKXD1 
Mutations
ICGC Data PortalKXD1 
TCGA Data PortalKXD1 
Broad Tumor PortalKXD1
OASIS PortalKXD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKXD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KXD1
DgiDB (Drug Gene Interaction Database)KXD1
DoCM (Curated mutations)KXD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KXD1 (select a term)
intoGenKXD1
Cancer3DKXD1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615178   
Orphanet
DisGeNETKXD1
MedgenKXD1
Genetic Testing Registry KXD1
NextProtQ9BQD3 [Medical]
TSGene79036
GENETestsKXD1
Target ValidationKXD1
Huge Navigator KXD1 [HugePedia]
snp3D : Map Gene to Disease79036
BioCentury BCIQKXD1
ClinGenKXD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79036
Chemical/Pharm GKB GenePA147358357
Clinical trialKXD1
Miscellaneous
canSAR (ICR)KXD1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKXD1
EVEXKXD1
GoPubMedKXD1
iHOPKXD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:51:49 CEST 2018
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