Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KY (kyphoscoliosis peptidase)

Identity

Alias_symbol (synonym)FLJ33207
Other aliasMFM7
HGNC (Hugo) KY
LocusID (NCBI) 339855
Atlas_Id 52152
Location 3q22.2  [Link to chromosome band 3q22]
Location_base_pair Starts at 134599923 and ends at 134651022 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KY   26576
Cards
Entrez_Gene (NCBI)KY  339855  kyphoscoliosis peptidase
AliasesMFM7
GeneCards (Weizmann)KY
Ensembl hg19 (Hinxton)ENSG00000174611 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174611 [Gene_View]  chr3:134599923-134651022 [Contig_View]  KY [Vega]
ICGC DataPortalENSG00000174611
TCGA cBioPortalKY
AceView (NCBI)KY
Genatlas (Paris)KY
WikiGenes339855
SOURCE (Princeton)KY
Genetics Home Reference (NIH)KY
Genomic and cartography
GoldenPath hg38 (UCSC)KY  -     chr3:134599923-134651022 -  3q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KY  -     3q22.2   [Description]    (hg19-Feb_2009)
EnsemblKY - 3q22.2 [CytoView hg19]  KY - 3q22.2 [CytoView hg38]
Mapping of homologs : NCBIKY [Mapview hg19]  KY [Mapview hg38]
OMIM605739   617114   
Gene and transcription
Genbank (Entrez)AF086360 AK090526 AK126993 AK293840 AK294500
RefSeq transcript (Entrez)NM_001350859 NM_001350860 NM_178554
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KY
Cluster EST : UnigeneHs.146730 [ NCBI ]
CGAP (NCI)Hs.146730
Alternative Splicing GalleryENSG00000174611
Gene ExpressionKY [ NCBI-GEO ]   KY [ EBI - ARRAY_EXPRESS ]   KY [ SEEK ]   KY [ MEM ]
Gene Expression Viewer (FireBrowse)KY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339855
GTEX Portal (Tissue expression)KY
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBH2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBH2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBH2
Splice isoforms : SwissVarQ8NBH2
PhosPhoSitePlusQ8NBH2
Domains : Interpro (EBI)Transglutaminase-like   
Domain families : Pfam (Sanger)Transglut_core (PF01841)   
Domain families : Pfam (NCBI)pfam01841   
Domain families : Smart (EMBL)TGc (SM00460)  
Conserved Domain (NCBI)KY
DMDM Disease mutations339855
Blocks (Seattle)KY
SuperfamilyQ8NBH2
Human Protein AtlasENSG00000174611
Peptide AtlasQ8NBH2
HPRD13953
IPIIPI00444643   IPI00964250   IPI00260270   IPI00939246   IPI00963991   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBH2
IntAct (EBI)Q8NBH2
FunCoupENSG00000174611
BioGRIDKY
STRING (EMBL)KY
ZODIACKY
Ontologies - Pathways
QuickGOQ8NBH2
Ontology : AmiGOcytoskeleton  proteolysis  peptidase activity  Z disc  
Ontology : EGO-EBIcytoskeleton  proteolysis  peptidase activity  Z disc  
NDEx NetworkKY
Atlas of Cancer Signalling NetworkKY
Wikipedia pathwaysKY
Orthology - Evolution
OrthoDB339855
GeneTree (enSembl)ENSG00000174611
Phylogenetic Trees/Animal Genes : TreeFamKY
HOVERGENQ8NBH2
HOGENOMQ8NBH2
Homologs : HomoloGeneKY
Homology/Alignments : Family Browser (UCSC)KY
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KY
dbVarKY
ClinVarKY
1000_GenomesKY 
Exome Variant ServerKY
ExAC (Exome Aggregation Consortium)KY (select the gene name)
Genetic variants : HAPMAP339855
Genomic Variants (DGV)KY [DGVbeta]
DECIPHERKY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKY 
Mutations
ICGC Data PortalKY 
TCGA Data PortalKY 
Broad Tumor PortalKY
OASIS PortalKY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKY  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KY
DgiDB (Drug Gene Interaction Database)KY
DoCM (Curated mutations)KY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KY (select a term)
intoGenKY
Cancer3DKY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605739    617114   
Orphanet
MedgenKY
Genetic Testing Registry KY
NextProtQ8NBH2 [Medical]
TSGene339855
GENETestsKY
Huge Navigator KY [HugePedia]
snp3D : Map Gene to Disease339855
BioCentury BCIQKY
ClinGenKY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339855
Chemical/Pharm GKB GenePA134878738
Clinical trialKY
Miscellaneous
canSAR (ICR)KY (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKY
EVEXKY
GoPubMedKY
iHOPKY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:22:02 CEST 2017

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