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L1RE1 (LINE1 retrotransposable element 1)

Identity

Alias_namesLRE1
LINE retrotransposable element 1
Alias_symbol (synonym)L1.2
Other alias
HGNC (Hugo) L1RE1
LocusID (NCBI) 4029
Atlas_Id 51367
Location 22q12.1  [Link to chromosome band 22q12]
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)L1RE1   6686
Cards
Entrez_Gene (NCBI)L1RE1  4029  LINE1 retrotransposable element 1
AliasesL1.2; LRE1
GeneCards (Weizmann)L1RE1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  L1RE1 [Vega]
TCGA cBioPortalL1RE1
AceView (NCBI)L1RE1
Genatlas (Paris)L1RE1
WikiGenes4029
SOURCE (Princeton)L1RE1
Genetics Home Reference (NIH)L1RE1
Genomic and cartography
GoldenPath hg38 (UCSC)L1RE1  -  
GoldenPath hg19 (UCSC)L1RE1  -  
EnsemblL1RE1 - [CytoView hg19]  L1RE1 - [CytoView hg38]
Mapping of homologs : NCBIL1RE1 [Mapview hg19]  L1RE1 [Mapview hg38]
OMIM151626   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)L1RE1
Gene ExpressionL1RE1 [ NCBI-GEO ]   L1RE1 [ EBI - ARRAY_EXPRESS ]   L1RE1 [ SEEK ]   L1RE1 [ MEM ]
Gene Expression Viewer (FireBrowse)L1RE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4029
GTEX Portal (Tissue expression)L1RE1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UN81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UN81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UN81
Splice isoforms : SwissVarQ9UN81
PhosPhoSitePlusQ9UN81
Domains : Interpro (EBI)Transposase_22   
Domain families : Pfam (Sanger)Transposase_22 (PF02994)   
Domain families : Pfam (NCBI)pfam02994   
Conserved Domain (NCBI)L1RE1
DMDM Disease mutations4029
Blocks (Seattle)L1RE1
PDB (SRS)2LDY    2W7A    2YKO    2YKP    2YKQ   
PDB (PDBSum)2LDY    2W7A    2YKO    2YKP    2YKQ   
PDB (IMB)2LDY    2W7A    2YKO    2YKP    2YKQ   
PDB (RSDB)2LDY    2W7A    2YKO    2YKP    2YKQ   
Structural Biology KnowledgeBase2LDY    2W7A    2YKO    2YKP    2YKQ   
SCOP (Structural Classification of Proteins)2LDY    2W7A    2YKO    2YKP    2YKQ   
CATH (Classification of proteins structures)2LDY    2W7A    2YKO    2YKP    2YKQ   
SuperfamilyQ9UN81
Peptide AtlasQ9UN81
Protein Interaction databases
DIP (DOE-UCLA)Q9UN81
IntAct (EBI)Q9UN81
BioGRIDL1RE1
STRING (EMBL)L1RE1
ZODIACL1RE1
Ontologies - Pathways
QuickGOQ9UN81
Ontology : AmiGOnucleotide binding  P-body  single-stranded DNA binding  single-stranded RNA binding  protein binding  nucleolus  cytoplasm  lysosome  endoplasmic reticulum  cytoplasmic stress granule  intracellular ribonucleoprotein complex  transposition, RNA-mediated  identical protein binding  
Ontology : EGO-EBInucleotide binding  P-body  single-stranded DNA binding  single-stranded RNA binding  protein binding  nucleolus  cytoplasm  lysosome  endoplasmic reticulum  cytoplasmic stress granule  intracellular ribonucleoprotein complex  transposition, RNA-mediated  identical protein binding  
NDEx NetworkL1RE1
Atlas of Cancer Signalling NetworkL1RE1
Wikipedia pathwaysL1RE1
Orthology - Evolution
OrthoDB4029
Phylogenetic Trees/Animal Genes : TreeFamL1RE1
HOVERGENQ9UN81
HOGENOMQ9UN81
Homologs : HomoloGeneL1RE1
Homology/Alignments : Family Browser (UCSC)L1RE1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerL1RE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)L1RE1
dbVarL1RE1
ClinVarL1RE1
1000_GenomesL1RE1 
Exome Variant ServerL1RE1
ExAC (Exome Aggregation Consortium)L1RE1 (select the gene name)
Genetic variants : HAPMAP4029
Genomic Variants (DGV)L1RE1 [DGVbeta]
DECIPHERL1RE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisL1RE1 
Mutations
ICGC Data PortalL1RE1 
TCGA Data PortalL1RE1 
Broad Tumor PortalL1RE1
OASIS PortalL1RE1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDL1RE1
BioMutasearch L1RE1
DgiDB (Drug Gene Interaction Database)L1RE1
DoCM (Curated mutations)L1RE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)L1RE1 (select a term)
intoGenL1RE1
Cancer3DL1RE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM151626   
Orphanet
MedgenL1RE1
Genetic Testing Registry L1RE1
NextProtQ9UN81 [Medical]
TSGene4029
GENETestsL1RE1
Target ValidationL1RE1
Huge Navigator L1RE1 [HugePedia]
snp3D : Map Gene to Disease4029
BioCentury BCIQL1RE1
ClinGenL1RE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4029
Chemical/Pharm GKB GenePA164722070
Clinical trialL1RE1
Miscellaneous
canSAR (ICR)L1RE1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineL1RE1
EVEXL1RE1
GoPubMedL1RE1
iHOPL1RE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:14:57 CEST 2017

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